Jatropha Genome Database

JcCB0280701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0280701.10 + phase: 0 
         (229 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g38030.1                                                       180   1e-45
Glyma16g10590.1                                                        91   1e-18

>Glyma18g38030.1 
          Length = 132

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 107/138 (77%), Gaps = 10/138 (7%)

Query: 3   PEIITDKTQMRNWSRAIRSQGKTIALVPTMGYLHHGHLSLVEEAKKLANVIVVSIYLNPG 62
           P +I+DK  MR+WSR++R+QGK I LVPTMG+LH GHLSLV +A++L++V+ VSIY+NPG
Sbjct: 5   PRVISDKASMRSWSRSMRAQGKLIGLVPTMGFLHAGHLSLVAQARQLSDVVAVSIYVNPG 64

Query: 63  QFSPSEDLSTYPSDFNGDIMKLMSVPGGVNAVFHPQNLYDYEIDRKNENYNVNFRDSGDN 122
           QF+P+EDLSTYPSDF+GD+ KL SVPGGV+ VFHP+NLYDY    KN   +V        
Sbjct: 65  QFAPTEDLSTYPSDFDGDVKKLASVPGGVDVVFHPRNLYDYG---KNGGGDVA------E 115

Query: 123 CKGVVSCVEEKGLGHETW 140
             G+VSCVE  G GHE+W
Sbjct: 116 AGGMVSCVES-GSGHESW 132


>Glyma16g10590.1 
          Length = 50

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 45/50 (90%)

Query: 145 RLEKGLCGKSRPVFFRGVATVVTKLFNIVEPDFAVFGKKDYQQWRIIQRM 194
           +LE GLCGK RP+FFRGVATVVTKLFNIVEP   VFGKKDYQQWR+IQRM
Sbjct: 1   KLEVGLCGKIRPIFFRGVATVVTKLFNIVEPGVDVFGKKDYQQWRLIQRM 50