Jatropha Genome Database

JcCB0273241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0273241.10 - phase: 2 /partial
         (64 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g08540.1                                                        49   2e-06
Glyma06g08650.1                                                        46   8e-06

>Glyma04g08540.1 
          Length = 488

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 5   GEAEKEYWSLLRGNQEKHWQDXXXXXXXXXXXXXXXXHSRYRDNFSGSNRPNKAQKTGAS 64
           GEAEKEYWSLLRGNQ KH ++                H+R RDN S  +R NKAQK G +
Sbjct: 431 GEAEKEYWSLLRGNQGKH-REFKNKQGRGGWHGRGGKHARSRDNGS-RDRRNKAQKVGGA 488


>Glyma06g08650.1 
          Length = 460

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 5   GEAEKEYWSLLRGNQEKHWQDXXXXXXXXXXXXXXXXHSRYRDNFSGSNRPNKAQKTGAS 64
           GEAEKEYW+LLRGNQ KH ++                H+R RDN S  +R NKAQK  A+
Sbjct: 403 GEAEKEYWNLLRGNQGKH-REFKNKQGRGGWHGRGGKHARSRDNGS-RDRRNKAQKVDAA 460