Jatropha Genome Database

JcCB0272031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0272031.20 - phase: 0 /pseudo/partial
         (70 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g10000.1                                                       105   9e-24
Glyma18g52980.1                                                        84   4e-17

>Glyma02g10000.1 
          Length = 233

 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 54/57 (94%)

Query: 14  RIVVPPELGYPENDFNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIMPN 70
           +I+VPPELGYPENDFNKS PRPTTFSGQRALDFVLRNQ LIDKTLLFDIELLKI+ N
Sbjct: 177 KIIVPPELGYPENDFNKSDPRPTTFSGQRALDFVLRNQDLIDKTLLFDIELLKIILN 233


>Glyma18g52980.1 
          Length = 229

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 45/57 (78%), Gaps = 12/57 (21%)

Query: 14  RIVVPPELGYPENDFNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIMPN 70
           RI+VPPELGYPENDFNKSGPRPTTFS            GLIDKTLLFDIELLKI+PN
Sbjct: 185 RIIVPPELGYPENDFNKSGPRPTTFS------------GLIDKTLLFDIELLKIIPN 229