Jatropha Genome Database

JcCB0269511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269511.10 - phase: 0 /pseudo
         (238 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g16600.1                                                        67   1e-11
Glyma05g10880.1                                                        65   5e-11
Glyma01g29320.1                                                        57   2e-08
Glyma02g10400.1                                                        55   6e-08
Glyma17g35790.1                                                        53   2e-07
Glyma16g28890.2                                                        53   3e-07
Glyma16g28890.1                                                        53   4e-07
Glyma11g18250.1                                                        51   8e-07
Glyma01g22660.1                                                        50   2e-06
Glyma20g39450.2                                                        49   6e-06
Glyma18g38660.1                                                        49   7e-06

>Glyma01g16600.1 
          Length = 2962

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 50  QHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADLNACS 109
           Q+I  + +L   NY  W+QL+R  ++G+    H+T N AP EK +  +  W++ D    +
Sbjct: 22  QNIHSAYRLTGKNYLKWSQLIRSILKGKGKGSHLTDN-APDEK-DAKFKSWDEEDSMIMA 79

Query: 110 WIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
           W+ N++   + +  +   +AK +WE + +TY   +D+ Q++D+ V+    KQG
Sbjct: 80  WLWNSMVPEISDTCMFLKSAKEIWEAVEQTYSKAKDAAQIYDVKVKTLGAKQG 132


>Glyma05g10880.1 
          Length = 986

 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 59/106 (55%)

Query: 57  KLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADLNACSWIINNIE 116
           KLN  NY  WAQ +++ ++G+  L  +TG+ +     + +  +W+  +    +W+IN+++
Sbjct: 45  KLNGKNYVEWAQSVKLTLDGKGKLGCLTGDTSQPGVIDPSLPRWKSENSLIIAWLINSMD 104

Query: 117 EHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
             +   Y+  PTAK +WE + + Y    +S Q+++L  Q    KQG
Sbjct: 105 SSIRKPYLFLPTAKDVWEAVRDCYSDLENSSQIYELKTQLWQSKQG 150


>Glyma01g29320.1 
          Length = 989

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%)

Query: 80  LHHITGNPAPLEKQNIAYTKWEQADLNACSWIINNIEEHLVNNYVEYPTAKALWEGLAET 139
           L ++ G     +  +  Y  W+  +    +W++N++EE + +NY+ Y TAK LW+ + E 
Sbjct: 28  LRYLNGERPKPDTADPQYAVWDAENSMVMTWLVNSMEEDISSNYMCYSTAKELWDSVTEM 87

Query: 140 YDSGRDSFQLFDLTVQANNQKQG 162
           Y    +  Q+++LT+QA   +QG
Sbjct: 88  YSDLGNKSQIYELTLQAREIRQG 110


>Glyma02g10400.1 
          Length = 106

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 48  SPQHISISV---KLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQAD 104
           SP+ I++ +   KLN   +  W + +R+ ++G+    +I+G+P   EK++    KW+  +
Sbjct: 1   SPEGIALPITCHKLNGQKFIQWERSIRIFLQGKGKGRYISGDPKQPEKRDSNLQKWQLEN 60

Query: 105 LNACSWIINNIEEHLVNNYVEYPTAKALWEGLAET 139
               SW++N +   +  N++ Y TAK +W  +  T
Sbjct: 61  SLVMSWLLNTMTNEIGENFMYYDTAKEIWNAMKTT 95


>Glyma17g35790.1 
          Length = 164

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 50/91 (54%)

Query: 62  NYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADLNACSWIINNIEEHLVN 121
           NY  W + +++ ++G+    +ITG+    +K +    KW+  +    SW++N +   +  
Sbjct: 1   NYTQWVRSVKIFLQGKGRKGYITGDSECPKKGDANVQKWKLENNQVMSWLLNTMTNEIGE 60

Query: 122 NYVEYPTAKALWEGLAETYDSGRDSFQLFDL 152
           N++ Y TAK +WE + E Y +  ++  +F++
Sbjct: 61  NFMFYDTAKDIWEAVKEMYSNMDNTSAVFEI 91


>Glyma16g28890.2 
          Length = 1019

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 24  SNQLITLLKHITSTQIN-TRQTESSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHH 82
           S  L T+L  +  T+   T     S+ ++  + V+LN  NY+ WA   ++ + G++   H
Sbjct: 665 STLLATILGEVPKTKGTITIPCSISTEKYDVLLVRLNGKNYSAWAFQFQIFVTGKDLWGH 724

Query: 83  ITGN-PAP-LEKQNIAYTKWEQADLNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETY 140
           + G+ P P  +   + + KW   D    +WI+ +++ ++V N   Y TA  +W  L + Y
Sbjct: 725 VDGSSPVPDKDTTKVEHDKWTVKDAQVMAWILGSVDPNIVLNLRPYKTAATMWNYLKKVY 784

Query: 141 ---DSGRDSFQ 148
              +  R S Q
Sbjct: 785 SQNNEARSSVQ 795


>Glyma16g28890.1 
          Length = 2359

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 24  SNQLITLLKHITSTQIN-TRQTESSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHH 82
           S  L T+L  +  T+   T     S+ ++  + V+LN  NY+ WA   ++ + G++   H
Sbjct: 501 STLLATILGEVPKTKGTITIPCSISTEKYDVLLVRLNGKNYSAWAFQFQIFVTGKDLWGH 560

Query: 83  ITGN-PAP-LEKQNIAYTKWEQADLNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETY 140
           + G+ P P  +   + + KW   D    +WI+ +++ ++V N   Y TA  +W  L + Y
Sbjct: 561 VDGSSPVPDKDTTKVEHDKWTVKDAQVMAWILGSVDPNIVLNLRPYKTAATMWNYLKKVY 620


>Glyma11g18250.1 
          Length = 457

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 48  SPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQADLN 106
           SP  +  S  LN  NY  W++ M  A+  +N L  I G  P P +K++  Y  W++ ++ 
Sbjct: 114 SPGMVLASPPLNANNYHTWSKGMFSALWSKNKLKFIDGTLPMP-KKEDANYKAWQRCNIM 172

Query: 107 ACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQ 161
             +WI  ++   +  + +    AK LW+ L E +  G + F + DL  + +  KQ
Sbjct: 173 VVTWITQSLSPQIAQSTIYIDNAKKLWDELKERFTKG-NYFIISDLLQEIHFIKQ 226


>Glyma01g22660.1 
          Length = 152

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 52  ISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQADLNACSW 110
           + +S  LN  NY +W++ M  A+  +N L  + G  P P + ++  Y  W++ ++   SW
Sbjct: 11  VLVSPPLNANNYHIWSRGMFRALWSKNKLEFVDGTLPMP-KMKDANYKAWQRCNIMVVSW 69

Query: 111 IINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQ 161
           I  ++   +  + +     K LW+ L E +  G    Q F +  Q +N+ Q
Sbjct: 70  ITRSLSPQIAQSTIYIDNVKKLWDELKERFTKGNLWKQSFPIKNQESNKFQ 120


>Glyma20g39450.2 
          Length = 2005

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 10  DLAESEETQTPENLSNQLITLLKHITSTQINTRQT-----ESSSPQHISISVKLNDFNYA 64
           D A++E  Q    L N +      +  T IN  ++      S +P    +S  L+  NY 
Sbjct: 275 DYAQNECEQDDSTLENSMKK--STMNETSINNMESYLYLHPSENPATALVSPVLDSTNYH 332

Query: 65  LWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQADLNACSWIINNIEEHLVNNY 123
            W++ M  A+  +N +  I G+ P PL K +  +  W + +    SWI++++   +  + 
Sbjct: 333 SWSRSMVTALSAKNKVEFIDGSAPEPL-KTDRMHGAWCRCNNMVVSWIVHSVATSIRQSI 391

Query: 124 VEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQGKI 164
           +    A+ +W  L   Y  G D  ++ DL  +A+  KQG +
Sbjct: 392 LWMDKAEEIWRDLKSRYSQG-DLLRISDLQQEASTMKQGTL 431


>Glyma18g38660.1 
          Length = 1634

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 46  SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQAD 104
           S  P  + ++  L+  NY  WA+ +R A+  +     + G  P P++  + ++  W + +
Sbjct: 26  SDGPSSVKVTPLLDGSNYHSWARSLRRALGAKLKFEFLDGTIPMPVDAFDPSFRAWNRCN 85

Query: 105 LNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSG 143
           +   SWI+N++E  +  + V    A  +W  L E +  G
Sbjct: 86  MLIHSWILNSVEPSISRSIVFMDNASDVWLDLKERFSQG 124