Jatropha Genome Database

JcCB0269491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269491.10 - phase: 0 /pseudo/partial
         (452 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g31840.1                                                       102   8e-22

>Glyma05g31840.1 
          Length = 527

 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 15  FLLNRRFIASMHPFPPANHRRYPAPMQLSFPFRAKTVNRQETNIPAVLETASVATENQSD 74
           FL N  F +  +PF    H +Y     LSFP   +T  R  T + + L    +A      
Sbjct: 17  FLHNNAF-SFTYPF----HHQYHTHASLSFPSPPQTRFRPPTTVFSALTAEQIAA----- 66

Query: 75  SPVRIVALVGKGSISPLKCATWEEVMLHTAKRLKWVDEGYDMLVFTDNLCXXXXXXXXXA 134
            PVR+VA+VG G+ SPLK A+WE+VMLHTAKRLKWVDEGY++LVFTD  C          
Sbjct: 67  PPVRMVAVVGNGAASPLKSASWEQVMLHTAKRLKWVDEGYELLVFTDE-CIISNGPMTMK 125

Query: 135 KGIEPCRYITDSCHFKSRISQVDPIQXQKCSKHNLLRLISE-SCKQTRRILHFRMKLMGL 193
              E            +    V+ I   + +  N++ L S    K          ++ G 
Sbjct: 126 LQRELLNADILVIVAVTNKESVEWINNNRKTIENVICLDSSPDLKNKLGGYDVPSEVRGS 185

Query: 194 YLEKIIGVSRSKKIKESMEVVKTVWEAW 221
                 G S+S+K KES EVV+TV EAW
Sbjct: 186 MFGNFFGNSQSEKAKESYEVVQTVSEAW 213