Jatropha Genome Database

JcCB0268641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0268641.10 - phase: 2 /partial
         (188 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42820.1                                                        80   2e-15
Glyma10g42820.3                                                        79   2e-15
Glyma10g42820.2                                                        79   2e-15
Glyma20g24180.1                                                        77   1e-14
Glyma04g00440.1                                                        63   1e-10
Glyma06g00540.1                                                        62   3e-10
Glyma05g30500.1                                                        50   1e-06

>Glyma10g42820.1 
          Length = 437

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDI-PLTL 114
           V  Y VK S AP+LR+IF KYGDI A+C  +S   R+  +E V  VV  LQS+ I  LT 
Sbjct: 255 VGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLTK 314

Query: 115 SEIRVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLKSVKANSMMVIKAATK 173
           S+I+ L   +KD+ES +L+++WL   +++I+E  ++ +   + ++ KANS   +++  K
Sbjct: 315 SKIKELMAILKDVESAQLRVAWLRSIVDEITENIELIDEHCVAETAKANSDREVESLNK 373


>Glyma10g42820.3 
          Length = 413

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDI-PLTL 114
           V  Y VK S AP+LR+IF KYGDI A+C  +S   R+  +E V  VV  LQS+ I  LT 
Sbjct: 231 VGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLTK 290

Query: 115 SEIRVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLKSVKANSMMVIKAATK 173
           S+I+ L   +KD+ES +L+++WL   +++I+E  ++ +   + ++ KANS   +++  K
Sbjct: 291 SKIKELMAILKDVESAQLRVAWLRSIVDEITENIELIDEHCVAETAKANSDREVESLNK 349


>Glyma10g42820.2 
          Length = 413

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDI-PLTL 114
           V  Y VK S AP+LR+IF KYGDI A+C  +S   R+  +E V  VV  LQS+ I  LT 
Sbjct: 231 VGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLTK 290

Query: 115 SEIRVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLKSVKANSMMVIKAATK 173
           S+I+ L   +KD+ES +L+++WL   +++I+E  ++ +   + ++ KANS   +++  K
Sbjct: 291 SKIKELMAILKDVESAQLRVAWLRSIVDEITENIELIDEHCVAETAKANSDREVESLNK 349


>Glyma20g24180.1 
          Length = 435

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDI-PLTL 114
           V  Y VK S AP+LR+IF KYGDI A+C  +S   R+  +E V  VV  LQS+ I  L  
Sbjct: 253 VGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLAK 312

Query: 115 SEIRVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLKSVKANS 164
           S+I  L   +KD+ES +L+++WL   +++I+E  ++ +   M +  KANS
Sbjct: 313 SKIMELMAILKDVESAQLRVAWLRNIVDEIAENIELIDEHCMAEMAKANS 362


>Glyma04g00440.1 
          Length = 173

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 2/90 (2%)

Query: 59  YEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQ--SSDIPLTLSE 116
           Y++K S   +L++I  KYGDI ANC  +S + R+  +E V  VV  L   SS + L+ S+
Sbjct: 7   YQIKESFVSILQSILHKYGDIGANCHLESVAMRSYYIECVCFVVQELHNSSSVMQLSKSK 66

Query: 117 IRVLQNEMKDLESTRLKLSWLTQPLEKISE 146
           ++ L   +KD+ES +L ++WL   L+++++
Sbjct: 67  VKELLAILKDVESAQLSVAWLASALDELAQ 96


>Glyma06g00540.1 
          Length = 249

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 7/119 (5%)

Query: 31  IHIPSSEDSFPSNSGAAIICSEMTLVEG-YEVKASVAPVLRAIFAKYGDIAANCQYKSPS 89
           I +P SE    S+   +++ SE  L  G Y++K S   +L++I  KYGDI  +CQ +S +
Sbjct: 44  ISLPISE----SDDDESVMSSEGRLQVGRYQIKESFGSILQSILDKYGDIGESCQLESVA 99

Query: 90  DRASLLEIVSDVVHRLQ--SSDIPLTLSEIRVLQNEMKDLESTRLKLSWLTQPLEKISE 146
            R+  +E V  VV  L   SS + L+ S+++ L   +KD+ES +L ++WL   L+++++
Sbjct: 100 MRSYYIECVCFVVQELHNSSSIMQLSKSKVKELLAILKDVESAQLGVAWLRSALDELAQ 158


>Glyma05g30500.1 
          Length = 224

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDI-PLT- 113
           VEGY+V+  +  ++R    K+GDI  NC   +    + LLE++ D++  LQ +++  +T 
Sbjct: 64  VEGYQVRPELESIVRKFLVKHGDIFQNCMVSTMIFHSMLLEMICDIISDLQDNNLYEITE 123

Query: 114 --LSEIRVLQNEMK-DLESTRLKLSWLTQPLEKISEVEKIAEMRSMLKSV 160
             L  +  + N+MK ++E   LKL  + +  + + +  K+ E + + K +
Sbjct: 124 DKLHSMITVANDMKVNIECLHLKLKEILEAKQTLDQYAKLEEKKHISKKI 173