Jatropha Genome Database

JcCB0267531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0267531.10 + phase: 2 /pseudo/partial
         (270 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g37000.1                                                       394   e-110
Glyma06g17990.1                                                       393   e-109
Glyma04g37000.2                                                       331   4e-91

>Glyma04g37000.1 
          Length = 285

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/226 (83%), Positives = 207/226 (91%), Gaps = 5/226 (2%)

Query: 20  SGCCSSSLWLAPNPSKRWGELFFLCYTPFWLTLCLGVVVPYKLYESFTELEYLLLAMISA 79
           +   SSSLWLAPNPSKRWGELFFL YTPFWLTLCLG+V+P+ LYE FTELEYLL+ ++SA
Sbjct: 2   TAPTSSSLWLAPNPSKRWGELFFLLYTPFWLTLCLGIVIPFNLYEKFTELEYLLIGLVSA 61

Query: 80  VPSFLIPMIFVGKADSSLSWKDRYWVKASVFSASLWIIIFSYVGNYFWTHYFFTVLGASY 139
           VP+F++P++ VGK D S+SWKDRYWVKAS     LWIIIFSYVGNYFWTHYFFTVLGASY
Sbjct: 62  VPAFVVPLLLVGKVDRSISWKDRYWVKAS-----LWIIIFSYVGNYFWTHYFFTVLGASY 116

Query: 140 TFPSWKMNDVPHTTFLLTHVCFLFYHVTSNMTLRRLRHAIAHLPDKLRWATEAAWILALA 199
           TFPSWKMN+VPHTTFLLTHVCFLFYHV+SNMTLRRLRH IA LP+KL+WATEAAWILALA
Sbjct: 117 TFPSWKMNNVPHTTFLLTHVCFLFYHVSSNMTLRRLRHFIADLPEKLKWATEAAWILALA 176

Query: 200 YFIAYLETLAISNFPYYEFVDRASMYTVGSLFYAIYFIVSFPMFLR 245
           YFIAYLETLAISNFPYY+FVDR SMY VGSLFYAIYFIVSFPMFLR
Sbjct: 177 YFIAYLETLAISNFPYYQFVDRDSMYKVGSLFYAIYFIVSFPMFLR 222


>Glyma06g17990.1 
          Length = 285

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/226 (83%), Positives = 207/226 (91%), Gaps = 5/226 (2%)

Query: 20  SGCCSSSLWLAPNPSKRWGELFFLCYTPFWLTLCLGVVVPYKLYESFTELEYLLLAMISA 79
           +   SSS WLAPNPSKRWGELFFL YTPFWLTLCLG+V+P+ LYE FTELEYLL+ ++SA
Sbjct: 2   AASASSSPWLAPNPSKRWGELFFLLYTPFWLTLCLGIVIPFNLYEKFTELEYLLIGLVSA 61

Query: 80  VPSFLIPMIFVGKADSSLSWKDRYWVKASVFSASLWIIIFSYVGNYFWTHYFFTVLGASY 139
           VP+F++P++ VGKAD S+SWKDRYWVKAS     LWIIIFSYVGNYFWTHYFFTVLGASY
Sbjct: 62  VPAFVVPLLLVGKADRSISWKDRYWVKAS-----LWIIIFSYVGNYFWTHYFFTVLGASY 116

Query: 140 TFPSWKMNDVPHTTFLLTHVCFLFYHVTSNMTLRRLRHAIAHLPDKLRWATEAAWILALA 199
           TFPSWKMN+VPHTTFLLTHVCFLFYHV+SNMTLRRLRH IA LP+KL+WATEAAWILALA
Sbjct: 117 TFPSWKMNNVPHTTFLLTHVCFLFYHVSSNMTLRRLRHFIAGLPEKLQWATEAAWILALA 176

Query: 200 YFIAYLETLAISNFPYYEFVDRASMYTVGSLFYAIYFIVSFPMFLR 245
           YFIAYLETLAISNFPYY+FVDR SMY VGSLFYAIYFIVSFPMFLR
Sbjct: 177 YFIAYLETLAISNFPYYQFVDRDSMYKVGSLFYAIYFIVSFPMFLR 222


>Glyma04g37000.2 
          Length = 204

 Score =  331 bits (849), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 159/189 (84%), Positives = 175/189 (92%), Gaps = 5/189 (2%)

Query: 24  SSSLWLAPNPSKRWGELFFLCYTPFWLTLCLGVVVPYKLYESFTELEYLLLAMISAVPSF 83
           SSSLWLAPNPSKRWGELFFL YTPFWLTLCLG+V+P+ LYE FTELEYLL+ ++SAVP+F
Sbjct: 6   SSSLWLAPNPSKRWGELFFLLYTPFWLTLCLGIVIPFNLYEKFTELEYLLIGLVSAVPAF 65

Query: 84  LIPMIFVGKADSSLSWKDRYWVKASVFSASLWIIIFSYVGNYFWTHYFFTVLGASYTFPS 143
           ++P++ VGK D S+SWKDRYWVKAS     LWIIIFSYVGNYFWTHYFFTVLGASYTFPS
Sbjct: 66  VVPLLLVGKVDRSISWKDRYWVKAS-----LWIIIFSYVGNYFWTHYFFTVLGASYTFPS 120

Query: 144 WKMNDVPHTTFLLTHVCFLFYHVTSNMTLRRLRHAIAHLPDKLRWATEAAWILALAYFIA 203
           WKMN+VPHTTFLLTHVCFLFYHV+SNMTLRRLRH IA LP+KL+WATEAAWILALAYFIA
Sbjct: 121 WKMNNVPHTTFLLTHVCFLFYHVSSNMTLRRLRHFIADLPEKLKWATEAAWILALAYFIA 180

Query: 204 YLETLAISN 212
           YLETLAISN
Sbjct: 181 YLETLAISN 189