Jatropha Genome Database

JcCB0265081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0265081.10 + phase: 2 /partial
         (231 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01200.1                                                       162   2e-40

>Glyma11g01200.1 
          Length = 680

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 16/236 (6%)

Query: 1   FLLSLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTAL 60
           +LLSLP+EER+KK+L E  P+ RFS +KHFAPE +  ++L  +Q+H  LV GLW  +++L
Sbjct: 324 YLLSLPVEERLKKML-EDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSL 382

Query: 61  LFPDSKEVYKPPARDYILLLFSKSLVISTSQITSLPARLKEPVRAFLNLFAVERPSFRD- 119
           L+PD     +  ARDY LLLFSKSL +  S ++     L   VR  L +F VER      
Sbjct: 383 LYPDGG--VETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKS 440

Query: 120 -------WKFKESPDAAFMKLHPEVVKKQVVIWEGVEKKLTGFLSSSSKGGKQNDKRQPT 172
                  WKF+E PD +F KL+P++V+KQ  +++G+EK+L+GF   SS  GK+   +   
Sbjct: 441 TGKPNPYWKFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGF---SSNVGKRKIGKNAV 497

Query: 173 LAHNLTKELDPHKIAPKS-ASVNRV-PIRTTITSESREALLKVLPKVLQTHKVCRY 226
               +  E+   + + +   S+ RV P + T+++E+R AL   L K+ QTHKVC +
Sbjct: 498 ANQGVNTEVHKSESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSF 553