Jatropha Genome Database

JcCB0262451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0262451.10 - phase: 0 /pseudo
         (90 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g09460.2                                                       111   1e-25
Glyma02g09460.1                                                       110   2e-25
Glyma06g17160.3                                                        60   4e-10
Glyma06g17160.1                                                        60   4e-10
Glyma06g17160.2                                                        60   5e-10
Glyma04g37910.1                                                        57   4e-09
Glyma05g33430.2                                                        56   9e-09
Glyma05g33430.1                                                        54   5e-08
Glyma08g01010.1                                                        52   1e-07
Glyma05g33430.3                                                        51   2e-07

>Glyma02g09460.2 
          Length = 210

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 65/78 (83%)

Query: 1  MEKTQEITVTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFV 60
          M++ ++  +TQMRKSVEKLGS+ E   D TLMRFLIARSM+ +KAAKMF+QW+KWRSA V
Sbjct: 1  MDQGRDSALTQMRKSVEKLGSSAEGYGDPTLMRFLIARSMEVDKAAKMFLQWKKWRSAMV 60

Query: 61 PNGFIPDSDVLDELQTRK 78
          PNGFI +S++ DEL+ RK
Sbjct: 61 PNGFISESEIPDELEARK 78


>Glyma02g09460.1 
          Length = 247

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 65/78 (83%)

Query: 1  MEKTQEITVTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFV 60
          M++ ++  +TQMRKSVEKLGS+ E   D TLMRFLIARSM+ +KAAKMF+QW+KWRSA V
Sbjct: 1  MDQGRDSALTQMRKSVEKLGSSAEGYGDPTLMRFLIARSMEVDKAAKMFLQWKKWRSAMV 60

Query: 61 PNGFIPDSDVLDELQTRK 78
          PNGFI +S++ DEL+ RK
Sbjct: 61 PNGFISESEIPDELEARK 78


>Glyma06g17160.3 
          Length = 228

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 6   EIT-VTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGF 64
           E+T +  MR  VE    +++   D  + RFL ARS+D EKA+ MF+++ KW+ +FVPNG+
Sbjct: 37  EVTKIRLMRAFVESRDPSSKEVDDLMIRRFLRARSLDVEKASAMFLKYLKWKRSFVPNGY 96

Query: 65  IPDSDVLDELQTRK 78
           I  S++ +++   K
Sbjct: 97  ISPSEIAEDIAQDK 110


>Glyma06g17160.1 
          Length = 265

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 6   EIT-VTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGF 64
           E+T +  MR  VE    +++   D  + RFL ARS+D EKA+ MF+++ KW+ +FVPNG+
Sbjct: 37  EVTKIRLMRAFVESRDPSSKEVDDLMIRRFLRARSLDVEKASAMFLKYLKWKRSFVPNGY 96

Query: 65  IPDSDVLDELQTRK 78
           I  S++ +++   K
Sbjct: 97  ISPSEIAEDIAQDK 110


>Glyma06g17160.2 
          Length = 247

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 6   EIT-VTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGF 64
           E+T +  MR  VE    +++   D  + RFL ARS+D EKA+ MF+++ KW+ +FVPNG+
Sbjct: 37  EVTKIRLMRAFVESRDPSSKEVDDLMIRRFLRARSLDVEKASAMFLKYLKWKRSFVPNGY 96

Query: 65  IPDSDVLDELQTRK 78
           I  S++ +++   K
Sbjct: 97  ISPSEIAEDIAQDK 110


>Glyma04g37910.1 
          Length = 264

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 6   EIT-VTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGF 64
           E+T +  MR  VE    +++  +D  + RFL ARS+D EKA+ MF+++ KW+ +FVPNG 
Sbjct: 36  EVTKIRLMRAFVESRDPSSKEENDLMMRRFLRARSLDVEKASAMFLKYLKWKRSFVPNGC 95

Query: 65  IPDSDVLDELQTRK 78
           I  S++ +++   K
Sbjct: 96  ISPSEIAEDIAQDK 109


>Glyma05g33430.2 
          Length = 256

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%)

Query: 3   KTQEITVTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPN 62
           +T+   +  +R  VE    +++   D  + RFL AR +D EKA+ M +++ KWR++FVPN
Sbjct: 26  ETELTKIRLLRAIVETRDPSSKEEDDFMIRRFLRARDLDVEKASAMLLKYLKWRNSFVPN 85

Query: 63  GFIPDSDVLDELQTRK 78
           G +  SDV +EL   K
Sbjct: 86  GSVSVSDVPNELAQDK 101


>Glyma05g33430.1 
          Length = 261

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query: 28  DTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGFIPDSDVLDELQTRK 78
           D  + RFL AR +D EKA+ M +++ KWR++FVPNG +  SDV +EL   K
Sbjct: 56  DFMIRRFLRARDLDVEKASAMLLKYLKWRNSFVPNGSVSVSDVPNELAQDK 106


>Glyma08g01010.1 
          Length = 210

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 28 DTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGFIPDSDVLDELQTRK 78
          D  + RFL AR +D EKA+ MF+++ KWR  FVPNG +  SDV  EL   K
Sbjct: 4  DFMIRRFLRARDLDVEKASAMFLKYLKWRHEFVPNGSVSVSDVPIELAQDK 54


>Glyma05g33430.3 
          Length = 204

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 33 RFLIARSMDPEKAAKMFVQWQKWRSAFVPNGFIPDSDVLDELQTRK 78
          RFL AR +D EKA+ M +++ KWR++FVPNG +  SDV +EL   K
Sbjct: 4  RFLRARDLDVEKASAMLLKYLKWRNSFVPNGSVSVSDVPNELAQDK 49