Jatropha Genome Database

JcCB0259591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0259591.10 - phase: 0 /partial
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g11980.1                                                        54   3e-08
Glyma01g05750.1                                                        54   3e-08

>Glyma02g11980.1 
          Length = 537

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 25  RIVPKKEWGNTKVQLLANGEEMEGLEFKVKEMIMESCRLVFRKSGFAFKDDWARII 80
           R +P++ WG T+++L+A    +  L+   +E I+ SCR V R SGF F+D+WA +I
Sbjct: 140 RWIPRESWGETEIRLMATAG-LRMLDAAAQERILASCRKVLRDSGFKFRDEWASVI 194


>Glyma01g05750.1 
          Length = 539

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 25  RIVPKKEWGNTKVQLLANGEEMEGLEFKVKEMIMESCRLVFRKSGFAFKDDWARII 80
           R +P++ WG T+++L+A    +  L+   +E I+ SCR V R SGF F+D+WA +I
Sbjct: 141 RWIPRESWGETEIRLMATAG-LRMLDAAAQERILASCRKVLRDSGFMFRDEWASVI 195