Jatropha Genome Database

JcCB0254461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0254461.10 + phase: 0 /pseudo/partial
         (163 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g16940.1                                                        57   6e-09
Glyma12g16990.1                                                        57   1e-08
Glyma12g16830.1                                                        51   4e-07
Glyma13g36090.1                                                        47   6e-06

>Glyma12g16940.1 
          Length = 554

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 29/132 (21%)

Query: 61  RPLANFPFTVWGERLGS--------LHFINRY---------------EKVKND---MLMA 94
           R  A F  T+WG+   S        LH  N Y               +++K D   M+++
Sbjct: 24  RHTATFHPTIWGDYFLSYDPSSAANLHVFNIYFGITLLEGDSDIKQVQQLKEDVRKMIVS 83

Query: 95  STSDSVE-KIISIYTLHRLGVSYHFEDEIEENLNKIFN--NXPNFLNENDYDLYTVAVIF 151
              ++   K+  I ++ RLGVSYHFE EI+  L++I++     N +  +D DL+ VA++F
Sbjct: 84  PIDNNFSFKLNFIDSIQRLGVSYHFEHEIDRALHQIYDISTKDNNIISHDNDLHHVALLF 143

Query: 152 RVFRHHGFKISS 163
           R+ R HG++ISS
Sbjct: 144 RLLRQHGYRISS 155


>Glyma12g16990.1 
          Length = 567

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 27/148 (18%)

Query: 34  LASFSSAKPTVRRTLKACSSXQSKTKVRPLANFPFTVWGERLGSLHFINRYEKVKND--- 90
           + + SS+ P V +  KA S       +R  ANF  +VWG+    L+++     V++D   
Sbjct: 1   MTNVSSSLPIVAQDAKAPS-----YFIRNTANFSPSVWGDYF--LYYVP--SSVEDDSHI 51

Query: 91  ------------MLMASTSDSVE-KIISIYTLHRLGVSYHFEDEIEENLNKIFN--NXPN 135
                       ML+A   ++   K+  I ++ RLGVSYHFE EI+  L++I+N     N
Sbjct: 52  KQAQLTKEEVRKMLIAPIDNNFYFKLEFIDSVQRLGVSYHFEHEIDGALHQIYNISTKDN 111

Query: 136 FLNENDYDLYTVAVIFRVFRHHGFKISS 163
            +  +D DL  VA++FR+ R  G+ ISS
Sbjct: 112 NIITHDDDLCHVALLFRLLRQQGYHISS 139


>Glyma12g16830.1 
          Length = 547

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 106 IYTLHRLGVSYHFEDEIEENLNKIFN--NXPNFLNENDYDLYTVAVIFRVFRHHGFKISS 163
           I ++ RLGVSYHFE EI+  L++I+N     N +  +D DL  VA++FR+ R  G+ ISS
Sbjct: 35  IDSVQRLGVSYHFEHEIDGVLHQIYNISTKDNNIITHDDDLCHVALLFRLLRQQGYHISS 94


>Glyma13g36090.1 
          Length = 500

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 100 VEKIISIYTLHRLGVSYHFEDEIEENLNKIFNN-XPNFLNENDYDLYTVAVIFRVFRHHG 158
           ++K+  I ++ R GVSYHF+ EI + L +I N+   N    +D + +++A++FR+ R  G
Sbjct: 30  IQKLNLIDSVQRFGVSYHFQQEINQALEQIHNSFTKNNTISDDGNHHSLALLFRLLRQQG 89

Query: 159 FKISS 163
           ++ISS
Sbjct: 90  YQISS 94