Jatropha Genome Database

JcCB0252341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.30 + phase: 0 /pseudo
         (204 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g29380.1                                                       108   4e-24
Glyma16g04120.1                                                       104   6e-23
Glyma09g16480.1                                                        59   4e-09
Glyma09g16490.1                                                        57   2e-08
Glyma0097s00200.1                                                      57   2e-08
Glyma0091s00240.1                                                      57   2e-08
Glyma09g16500.1                                                        56   2e-08

>Glyma19g29380.1 
          Length = 312

 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 105/190 (55%), Gaps = 9/190 (4%)

Query: 1   MESKALLSGLCSN-STFPAIQNNKKPLSLTFXXXXXXXXXGQSQ----NYVSFNTHQ-SI 54
           ME++ +LS  C   S+ P+I   K+  S  F           SQ    N  S   H  SI
Sbjct: 3   MEAQQILSRFCPKPSSVPSIPIVKQQFSPKFPRLPSSSLYPSSQSQNLNVPSGAFHPISI 62

Query: 55  SPPRVKSLSFKRLECANSSEKLGSTGFHNEGYLNSGIKRKKLAVFVSGGGSNFKSVHEAC 114
               V S S KR+ C++SS         +E      ++RKKLAVFVSGGGSNF+++HEA 
Sbjct: 63  VHKEVCSSSCKRIWCSSSSSSTAEPKEGHEVRAQVTVRRKKLAVFVSGGGSNFRAIHEAS 122

Query: 115 IQGSVHGDVVAVVTNRKGCGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAALRFGXFL 174
            +GS+HGDV+ +VTN+  CGGAEYARN  IPV+L+  +KDE +   P DLV  LR     
Sbjct: 123 KRGSLHGDVLVLVTNKSDCGGAEYARNNGIPVILYHISKDESN---PSDLVDTLRKFEVD 179

Query: 175 FVFLNFELKF 184
           F+ L   LK 
Sbjct: 180 FILLAGYLKL 189


>Glyma16g04120.1 
          Length = 316

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 67/94 (71%), Gaps = 3/94 (3%)

Query: 91  IKRKKLAVFVSGGGSNFKSVHEACIQGSVHGDVVAVVTNRKGCGGAEYARNKEIPVVLFP 150
           + RKKLAVFVSGGGSNF+++HEA  +GS+HGDV+ +VTN+  CGGA YARN  IPV+L+P
Sbjct: 103 VGRKKLAVFVSGGGSNFRAIHEASKRGSLHGDVLVLVTNKSDCGGAGYARNNGIPVILYP 162

Query: 151 RTKDEPDGLSPRDLVAALRFGXFLFVFLNFELKF 184
           + KDE +   P DLV  LR     F+ L   LK 
Sbjct: 163 KAKDESN---PSDLVETLRKFKVDFILLAGYLKL 193


>Glyma09g16480.1 
          Length = 58

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 133 CGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAALRFGXFLFVFLNFEL 182
           CGG EYARN  I V+LFP+TKDE +GLSP DLV  L+   +L  FL   L
Sbjct: 1   CGGVEYARNNGILVILFPKTKDESNGLSPSDLVDTLKSD-YLLHFLQLYL 49


>Glyma09g16490.1 
          Length = 38

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 133 CGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAAL 168
           CGG EYARN  I V+LFP+TKDE +GLSP DLV  L
Sbjct: 2   CGGVEYARNNGILVILFPKTKDESNGLSPSDLVDTL 37


>Glyma0097s00200.1 
          Length = 38

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 133 CGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAAL 168
           CGG EYARN  I V+LFP+TKDE +GLSP DLV  L
Sbjct: 2   CGGVEYARNNGILVILFPKTKDESNGLSPSDLVDTL 37


>Glyma0091s00240.1 
          Length = 38

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 133 CGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAAL 168
           CGG EYARN  I V+LFP+TKDE +GLSP DLV  L
Sbjct: 2   CGGVEYARNNGILVILFPKTKDESNGLSPSDLVDTL 37


>Glyma09g16500.1 
          Length = 38

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 133 CGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAAL 168
           CGG EYARN  I V+LFP+TKDE +GLSP DL+  L
Sbjct: 2   CGGVEYARNNGILVILFPKTKDESNGLSPSDLIDTL 37