Jatropha Genome Database

JcCB0249501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249501.20 + phase: 0 /pseudo/partial
         (67 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g40430.1                                                        76   8e-15
Glyma14g40430.2                                                        76   8e-15
Glyma17g37730.1                                                        76   8e-15

>Glyma14g40430.1 
          Length = 152

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 2  IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVYNLV 39
          IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEV+ LV
Sbjct: 2  IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLV 39


>Glyma14g40430.2 
          Length = 142

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 1  QIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVYNLV 39
           IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEV+ LV
Sbjct: 1  MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLV 39


>Glyma17g37730.1 
          Length = 142

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 1  QIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVYNLV 39
           IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEV+ LV
Sbjct: 1  MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLV 39