Jatropha Genome Database

JcCB0247731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0247731.10 + phase: 0 /partial
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g35780.1                                                       322   1e-88
Glyma03g33080.1                                                       320   7e-88

>Glyma19g35780.1 
          Length = 359

 Score =  322 bits (825), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 143/187 (76%), Positives = 170/187 (90%)

Query: 1   VDNRDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 60
           +DNRD++EPR++ E+AV+LCDRNFG+GADGVIF +PG NGTDY+MRIFNSDGSEPEMCGN
Sbjct: 90  IDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGN 149

Query: 61  GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPA 120
           GVRCFA+F+++LENL G+ SFTIHTGAGLI+PE+ EDG V+VDMGEP+LKA DVPT+LPA
Sbjct: 150 GVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPVLKALDVPTKLPA 209

Query: 121 NKDDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEIGPKFEHHAV 180
           NKD+AVVKS+L VDG  W+VTCVSMGNPHCVTF  + +++LLVD L LAEIGPKFEHH V
Sbjct: 210 NKDNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEV 269

Query: 181 FPARTNT 187
           FPARTNT
Sbjct: 270 FPARTNT 276


>Glyma03g33080.1 
          Length = 417

 Score =  320 bits (819), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 144/187 (77%), Positives = 170/187 (90%)

Query: 1   VDNRDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 60
           +DNRDS+EP+++ E+AV+LCDRNFG+GADGVIF +PG +GTDY+MRIFNSDGSEPEMCGN
Sbjct: 128 IDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGTDYTMRIFNSDGSEPEMCGN 187

Query: 61  GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPA 120
           GVRCFA+F+++LENL G+ SFTIHTGAGLI+PE+ EDG V+VDMGEPILKASDVPT+L A
Sbjct: 188 GVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPILKASDVPTKLHA 247

Query: 121 NKDDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEIGPKFEHHAV 180
           NKD+AVVKSEL VDG  W+VTCVSMGNPHCVTF  + +++LLVD L LAEIGPKFEHH V
Sbjct: 248 NKDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEV 307

Query: 181 FPARTNT 187
           FPARTNT
Sbjct: 308 FPARTNT 314