Jatropha Genome Database

JcCB0244361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0244361.10 + phase: 0 /partial
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g42020.1                                                       147   3e-36
Glyma15g03370.1                                                       145   9e-36
Glyma03g28580.1                                                        66   7e-12
Glyma19g31330.1                                                        66   7e-12
Glyma06g46550.1                                                        64   5e-11
Glyma12g31680.1                                                        62   1e-10
Glyma08g36350.1                                                        50   4e-07
Glyma16g12090.1                                                        50   5e-07
Glyma04g24870.2                                                        50   6e-07
Glyma04g24870.1                                                        50   6e-07
Glyma03g28590.1                                                        49   9e-07
Glyma17g09110.1                                                        47   5e-06
Glyma05g07630.1                                                        46   8e-06

>Glyma13g42020.1 
          Length = 403

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 78/94 (82%), Gaps = 1/94 (1%)

Query: 32  MDPFKMGPLGRHDFRPVKHEVAPYKKVMGSWPRDEKGRLG-NGKLEFVNEVFGPESLEFD 90
           MDPF +GP+  H+FRPVKH +APY +VM +WPRD   RL  +GK EF N+VFGPESLEFD
Sbjct: 26  MDPFHLGPVSEHEFRPVKHSIAPYHQVMKNWPRDNMSRLALHGKSEFKNQVFGPESLEFD 85

Query: 91  AIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
            +G GPYTGLADGRVVRWMGE +GWETFAVVT+N
Sbjct: 86  HMGRGPYTGLADGRVVRWMGEQLGWETFAVVTSN 119


>Glyma15g03370.1 
          Length = 381

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 32  MDPFKMGPLGRHDFRPVKHEVAPYKKVMGSWPRDEKGRLG-NGKLEFVNEVFGPESLEFD 90
           MDPF +GP+  H+FRPVKH +APY +VM +WPRD   RL  +GK EF N+VFGPESLEFD
Sbjct: 4   MDPFHLGPVAEHEFRPVKHSIAPYHQVMKNWPRDNMSRLALHGKSEFKNQVFGPESLEFD 63

Query: 91  AIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
            +G GPYTGLADGRVVRWMGE  GWETFAVVT+N
Sbjct: 64  NMGRGPYTGLADGRVVRWMGEQHGWETFAVVTSN 97


>Glyma03g28580.1 
          Length = 371

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 66  EKGRLGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
            K  L   +L  V    GPESL FDA G GPYTG+ADGR+++W GE+ GW  FAV ++N
Sbjct: 36  SKDHLHAARLLHVTGAVGPESLVFDADGGGPYTGVADGRILKWEGEERGWTEFAVTSSN 94


>Glyma19g31330.1 
          Length = 371

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 66  EKGRLGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
            K  L   +L  V    GPESL FDA G GPYTG+ADGR+++W GE+ GW  FAV ++N
Sbjct: 36  SKDHLHAARLLHVTGAVGPESLVFDADGGGPYTGVADGRILKWEGEERGWTEFAVTSSN 94


>Glyma06g46550.1 
          Length = 441

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 32  MDPFKMGPLGRH-DFRPVKHEVAPYKKVMGSWPRDEKGRLGNGKLEFVNEVFGPESLEFD 90
           +DPF+  P+    DF   + ++  + +V     +D+   L   +++F N+V GPES+ FD
Sbjct: 68  LDPFQHSPIAHFPDFEVKRVDMPAWSEVPTD--QDKHNLLQKSEIKFANQVQGPESIAFD 125

Query: 91  AIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
            +G GPYTGLADG +V W G    W  FA  + N
Sbjct: 126 PLGRGPYTGLADGTIVFWNGH--SWLHFAYTSPN 157


>Glyma12g31680.1 
          Length = 364

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 32  MDPFKMGPL-GRHDFRPVKHEVAPYKKVMGSWPRDEKGRLGNGKLEFVNEVFGPESLEFD 90
           +DPF+  P+ G   F   K ++  + +V     RD+   L   +L FVN+V GPES+ FD
Sbjct: 20  LDPFEPSPIVGFPPFDVHKIDMPAWSEVPTD--RDKDNSLLKSELLFVNQVQGPESIAFD 77

Query: 91  AIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
            +G  PYTG+ADGR++ W G+   W  FA  + N
Sbjct: 78  PLGRDPYTGVADGRILFWNGQ--SWTDFAYTSPN 109


>Glyma08g36350.1 
          Length = 349

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 60  GSWPRDEKGRLGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFA 119
            ++ RD  G     +L+  + VFG ES+ FD  G GPY G++DGR+++W      W  FA
Sbjct: 23  AAYIRD--GLKSYSQLDLPHSVFGSESVAFDCHGKGPYVGVSDGRILKWQETKREWIDFA 80

Query: 120 VVT 122
           V +
Sbjct: 81  VTS 83


>Glyma16g12090.1 
          Length = 347

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 73  GKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
            +L+  + VFG ES+ FD  G GPY G++DGR+++W      W  FAV +
Sbjct: 33  SQLDLPHSVFGSESVAFDCHGKGPYVGVSDGRILKWHETKREWIDFAVTS 82


>Glyma04g24870.2 
          Length = 291

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 64  RDEKGRLGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTT 123
           +D   R+ + +L F + + GP+SL FD+IG GPYTG++DGR++++     G+  FA    
Sbjct: 22  KDASTRILH-RLFFPSSLTGPQSLAFDSIGGGPYTGVSDGRILKYEETYSGFVEFAYTLQ 80

Query: 124 N 124
           N
Sbjct: 81  N 81


>Glyma04g24870.1 
          Length = 1332

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           +L F + + GP+SL FD+IG GPYTG++DGR++++     G+  FA    N
Sbjct: 31  RLFFPSSLTGPQSLAFDSIGGGPYTGVSDGRILKYEETYSGFVEFAYTLQN 81


>Glyma03g28590.1 
          Length = 382

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 78  VNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           ++   GPES  FD  G GPYTG++DGR+++W      W  F+ + ++
Sbjct: 43  IDGAVGPESFSFDPRGEGPYTGVSDGRIIKWHQTQNRWLNFSAIASS 89


>Glyma17g09110.1 
          Length = 336

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           +L   + V GPES+ FD  G GPY G++DGR++++ G   G++ +A  + N
Sbjct: 25  RLPLPSPVTGPESVAFDRNGGGPYVGVSDGRILKYAGPTEGFKEYAFTSPN 75


>Glyma05g07630.1 
          Length = 342

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           +L   + V GPES+ FD  G GPY G++DGR++++ G   G++ +A  + N
Sbjct: 31  RLPLPSPVTGPESVAFDRNGGGPYVGVSDGRILKYAGPGEGFKEYAFTSPN 81