Jatropha Genome Database

JcCB0242921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242921.10 - phase: 1 /pseudo
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g01360.1                                                       328   3e-90
Glyma11g37390.1                                                       327   3e-90

>Glyma18g01360.1 
          Length = 376

 Score =  328 bits (840), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 172/185 (92%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQSFGGRVITVKYL 60
           +GRP+LNLER LDHDGHPLAIT  DAVAASGVPPWNWRETPGNG E+QS  GRVI+VK+ 
Sbjct: 192 TGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETPGNGGESQSCCGRVISVKWG 251

Query: 61  DYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 120
           DYTRR+G+DGT +AIKEAI++AFRLRTKR FWLEDEDQIIRS+DR+MP+GNYTLH+DEG+
Sbjct: 252 DYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPLGNYTLHIDEGM 311

Query: 121 AVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGAL 180
           A+K+ LYDE DH+PVHTE+K+FYTEDD+RDFLTRRGW CLREFD YRN+DNMDDLRPGA+
Sbjct: 312 AIKLPLYDEPDHIPVHTEDKIFYTEDDFRDFLTRRGWICLREFDSYRNIDNMDDLRPGAI 371

Query: 181 YRGVT 185
           YRGV+
Sbjct: 372 YRGVS 376


>Glyma11g37390.1 
          Length = 374

 Score =  327 bits (839), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 172/185 (92%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQSFGGRVITVKYL 60
           +GRP+LNLER LDHDGHPLAIT  DAVAASGVPPWNWRETPGNG E+QS  GRVI+VK+ 
Sbjct: 190 TGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETPGNGGESQSCCGRVISVKWG 249

Query: 61  DYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 120
           DYTRR+G+DGT +AIKEAI++AFRLRTKR FWLEDEDQIIRS+DR+MP+GNYTLH+DEG+
Sbjct: 250 DYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPLGNYTLHIDEGM 309

Query: 121 AVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGAL 180
           A+K+ LYDE DH+PVHTE+K+FYTEDD+RDFLTRRGW CLREFD YRN+DNMDDLRPGA+
Sbjct: 310 AIKLPLYDEPDHIPVHTEDKIFYTEDDFRDFLTRRGWICLREFDSYRNIDNMDDLRPGAI 369

Query: 181 YRGVT 185
           YRGV+
Sbjct: 370 YRGVS 374