Jatropha Genome Database

JcCB0242781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.20 + phase: 0 /partial
         (170 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g11870.2                                                       191   3e-49
Glyma04g30970.1                                                       130   6e-31

>Glyma15g11870.2 
          Length = 995

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 110/143 (76%), Gaps = 3/143 (2%)

Query: 31  EIAKKERQRIEELLRSKGMKYGSYPRFTVALKGQKVTIKFQIPPACDVPQLIANLAMNLG 90
           E AKKER+RIEELLRS+G++YGSYPRFTV++KGQKV+IKFQIPP C+V QLIANL  +LG
Sbjct: 71  ESAKKERERIEELLRSRGIRYGSYPRFTVSVKGQKVSIKFQIPPNCEVSQLIANLTAHLG 130

Query: 91  LKVDERGGGSDMRLRAWDSAVAWQLTLSCPEKQKESHGDNSS---FAEPEGDLCILLFRS 147
            K +  GGGSDM LRAWDS VAWQLTL+ P K K   G+N S       + DLCIL+F S
Sbjct: 131 TKAEGHGGGSDMLLRAWDSTVAWQLTLTHPSKLKHIQGNNLSSTDIIADDRDLCILIFHS 190

Query: 148 LISRDKAEIEFIKSGRLSETELD 170
           LI  DKAEIEFIK G LS  ELD
Sbjct: 191 LIGSDKAEIEFIKQGDLSPEELD 213


>Glyma04g30970.1 
          Length = 117

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 71/84 (84%)

Query: 28  DLEEIAKKERQRIEELLRSKGMKYGSYPRFTVALKGQKVTIKFQIPPACDVPQLIANLAM 87
           D++E AKKER+RIEELLRS+G++YGSYPRFTV +KGQKV+IKFQIPP C+V QLIANL  
Sbjct: 15  DVQESAKKERERIEELLRSRGIRYGSYPRFTVYVKGQKVSIKFQIPPNCEVSQLIANLTA 74

Query: 88  NLGLKVDERGGGSDMRLRAWDSAV 111
           +LG K +  GGGSDM LRAWD  V
Sbjct: 75  HLGTKAEGHGGGSDMLLRAWDRHV 98