Jatropha Genome Database

JcCB0242781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.10 + phase: 1 /partial
         (352 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g11880.1                                                       233   3e-61
Glyma07g39370.1                                                       221   1e-57
Glyma09g01040.1                                                       162   6e-40

>Glyma15g11880.1 
          Length = 297

 Score =  233 bits (593), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 152/323 (47%), Positives = 177/323 (54%), Gaps = 40/323 (12%)

Query: 32  RSSDSNSPEFEFWMLQNPSFPEPNLLSADELFVDGVXXXXXXXXXXXXXXXXXXXXXXXX 91
           R+S  NSPEFEFWMLQNPSFP+PNLLSADELFVDG                         
Sbjct: 7   RTSCCNSPEFEFWMLQNPSFPQPNLLSADELFVDGFLLPLHLLPNKPHPPQASNF----- 61

Query: 92  XXDFEPQLELGPQISYETIAAESAAPLTASKRWKDIFKKSDKKTATAQNQXXXXXXXXXX 151
                P  E  P+ S     + S    ++SKRWKDIFKKSDKK A  +            
Sbjct: 62  ---ITPIHE--PEPSPSITESTSTTTFSSSKRWKDIFKKSDKKNA--ETNNNEEKEKAKK 114

Query: 152 XXXXSQSGATSGAELNINIWPFARSRSEGNSASRPRMFPGAPGARKVSSAPCSRSNSAGE 211
               S SGA+S AELNINIWPF+RSRS GN+ +RP++F GAP  RKV+SAPCSRSNSAGE
Sbjct: 115 KERKSASGASS-AELNINIWPFSRSRSAGNAGTRPKLFAGAPPTRKVNSAPCSRSNSAGE 173

Query: 212 SKSRKWPTSPGRGGVHLGRSSPVWQVRRGAAGGWSSKSVYSEPVSRNSEKGMSKKVTDRP 271
           SKSRKWP+SPGR GVH+GRSSPVWQVRR                 +NS +   K    R 
Sbjct: 174 SKSRKWPSSPGRAGVHVGRSSPVWQVRR-----------------KNSNEPPQKPKARRS 216

Query: 272 RKTAAXXXXXXXXXKAKVVNLNVPTCIGYRQQLSCRSHESSGI---RDCTXXXXXXXXXX 328
           + TA           A+V+NLNVP CIGYR  LSCRS E+S        +          
Sbjct: 217 KVTAGGGT-------ARVLNLNVPMCIGYRHHLSCRSDENSAAAVTNGNSNNNSTTNNNN 269

Query: 329 XXXXXXXXXXHFFNLRSLFTKKV 351
                     + FNLR+LFTKK 
Sbjct: 270 SGGNDGGSGGNIFNLRNLFTKKC 292


>Glyma07g39370.1 
          Length = 274

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/317 (44%), Positives = 173/317 (54%), Gaps = 60/317 (18%)

Query: 34  SDSNSPEFEFWMLQNPSFPEPNLLSADELFVDGVXXXXXXXXXXXXXXXXXXXXXXXXXX 93
           S S SPEFEFWM++NPSFP+PN+LSAD+L V+GV                          
Sbjct: 12  SPSASPEFEFWMVRNPSFPQPNILSADQLIVNGVLLPLHLLN------------------ 53

Query: 94  DFEPQLELGPQISYETIAAESAAPLTASKRWKDIFKKSDKKTATAQNQXXXXXXXXXXXX 153
                 +  P  +    ++ S++  TASKRWKDIFKKSDKK   A+              
Sbjct: 54  ------KPDPSPAITDSSSSSSSAATASKRWKDIFKKSDKKNTDAK------------KL 95

Query: 154 XXSQSGATSGAELNINIWPFARSRSEGNSASRPRMFPGAPGARKVSSAPCSRSNSAGESK 213
              +SG T+ AELNINIWPF+RS+S GN+A+RP+ F   P  RK +SAPCSRSNSAGESK
Sbjct: 96  KEKKSGVTTSAELNINIWPFSRSKSAGNAATRPKPF--VPATRKANSAPCSRSNSAGESK 153

Query: 214 SRKWPTSPGRGGVHLGRSSPVWQVRRGAAGGWSSKSVYSEPVSRNSEKGMSKKVTDRPRK 273
           SRKWP+SP R GVHLGRSSPVWQVRR        K+   EP+  N +   SK+ + R + 
Sbjct: 154 SRKWPSSPARPGVHLGRSSPVWQVRR-------PKNPVPEPL--NPDINKSKRESHRSKV 204

Query: 274 TAAXXXXXXXXXKAKVVNLNVPTCIGYRQQLSCRSHESSGIRDCTXXXXXXXXXXXXXXX 333
                       K KV+NLNVP CIGYR   +CRS E+S IR                  
Sbjct: 205 VGG-----SGSSKTKVLNLNVPMCIGYRHHFTCRSDENSAIR--------VSNPNPPHAH 251

Query: 334 XXXXXHFFNLRSLFTKK 350
                  F LRSLFTKK
Sbjct: 252 ANVGGKLFTLRSLFTKK 268


>Glyma09g01040.1 
          Length = 196

 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/195 (48%), Positives = 112/195 (57%), Gaps = 33/195 (16%)

Query: 165 ELNINIWPFARSRSEGNSASRPRMFPGAPGARKVSSAPCSRSNSAGESKSRKWPTSPGRG 224
           ELNINIWPF+RSRS GN+ +RP++F GAP  RKV+SAPCSRSNSAGESKSRKWP+SPGR 
Sbjct: 26  ELNINIWPFSRSRSAGNAGTRPKLFAGAPVTRKVNSAPCSRSNSAGESKSRKWPSSPGRA 85

Query: 225 GVHLGRSSPVWQVRRGAAGGWSSKSVYSEPVSRNSEKGMSKKVTDRPRKTAAXXXXXXXX 284
           GVH+GRSSPVWQVRR                 +NS +   K  T R +  A         
Sbjct: 86  GVHVGRSSPVWQVRR-----------------KNSNEPPQKPKTRRSKVAAGGGT----- 123

Query: 285 XKAKVVNLNVPTCIGYRQQLSCRSHESSGIRDCTXXXXX---------XXXXXXXXXXXX 335
             A+V+NLNVP CIGYR  LSCRS E+S +                              
Sbjct: 124 --ARVLNLNVPMCIGYRHHLSCRSDENSAVGVSGSAAAVINCNSNNNNTNNNNSGGNDGG 181

Query: 336 XXXHFFNLRSLFTKK 350
              + FNLR+LFTKK
Sbjct: 182 SGGNIFNLRNLFTKK 196