Jatropha Genome Database

JcCB0238051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0238051.10 - phase: 1 /partial
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g27110.1                                                       145   2e-35
Glyma07g14570.1                                                       138   3e-33

>Glyma03g27110.1 
          Length = 453

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 98/136 (72%), Gaps = 10/136 (7%)

Query: 22  AQTEEFPDGDCASSRQNHSTFPEPSTSIKPSTSATAAP---SIQITRTSSDGPSQNNSAI 78
           AQT  +  G C S       F    TS++ S ++T+AP     +ITR+S       +SA+
Sbjct: 37  AQTTSYITG-CFSDYSGKLLFLIHLTSVESSNASTSAPPHMHDEITRSS------GSSAL 89

Query: 79  VPSSHSGQNGISIFQGLIERARRTVRGSADDIGWMQRASGMPPVEDGTGRFMEVLDNIRH 138
           + S+ +GQ+ ISIFQ LI+RARRTVRGSADDIGW+QR  GMPPVEDGT RF+E+LDNI+H
Sbjct: 90  IESNRTGQSRISIFQSLIDRARRTVRGSADDIGWLQRDPGMPPVEDGTERFLEILDNIKH 149

Query: 139 GLHKLPNSMVYLLVPG 154
           G+HKLPNS+VYLL+PG
Sbjct: 150 GVHKLPNSVVYLLIPG 165


>Glyma07g14570.1 
          Length = 498

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 106/157 (67%), Gaps = 12/157 (7%)

Query: 1   EHSPRHSGNS-THAQELVTFSSAQTEEFPDGDC--ASSRQNHSTFPEPSTSIKPSTSATA 57
           EHSPR  G S T A ELV F S++T      +    +S + H T  E S+      S +A
Sbjct: 63  EHSPRLFGASDTRAPELVDFPSSETNASSSTEIEHIASNRTHLTCVESSS-----ASTSA 117

Query: 58  APSIQITRTSSDGPSQNNSAIVPSSHSGQNGISIFQGLIERARRTVRGSADDIGWMQRAS 117
            P +    T S G    +SA++ S+ +GQ+GISI Q LI+RARRTVRGSADDIGW+QR  
Sbjct: 118 PPHMHDEITGSSG----SSALIESNRTGQSGISILQSLIDRARRTVRGSADDIGWLQRDP 173

Query: 118 GMPPVEDGTGRFMEVLDNIRHGLHKLPNSMVYLLVPG 154
           GMP VEDGT RF+E+LDNI+HG+H+LPNS+VYLL+PG
Sbjct: 174 GMPSVEDGTVRFLEILDNIKHGVHRLPNSVVYLLIPG 210