Jatropha Genome Database

JcCB0236281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0236281.10 + phase: 1 /pseudo/partial
         (392 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g38350.1                                                       172   5e-43
Glyma18g48000.1                                                       134   2e-31

>Glyma09g38350.1 
          Length = 844

 Score =  172 bits (437), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 211 AKMKRQNAIKKQASIMERFLKRSK-TDSPCQNEGTSIEETAPVLSGKKSEKMPEAVTMAM 269
           A++K++ +++KQASIMERFLKRSK + SP + +  S + TA  L   K++ + E+ T++M
Sbjct: 341 AELKKKRSLQKQASIMERFLKRSKNSPSPSEKDKVSTKSTASDLLRCKNKSLFESATLSM 400

Query: 270 DCTLSSNXXXXXXXXXKLHLSSWHHLGHAIRSNRKQHWSIRQKPKTELFKELKLTTAREL 329
           DCTL+S+         K H SSW  LG  IR NRKQ W +RQKP+T++FKELKL+  +  
Sbjct: 401 DCTLASSSDVMLEDIRKTHFSSWRSLGQLIRLNRKQRWGLRQKPRTKVFKELKLSAIKTA 460

Query: 330 SHDGELIVEKLESEWGEQSSDDRLCATNLESSLND-KKWKRRKKLLQFDKSHRPAFYGIW 388
            HD EL +EK  +  GE SSD   C  N +SS  D KK+ R ++LLQFDKSHRPAFYG+W
Sbjct: 461 VHDVELDMEKHVNRLGECSSDISSCPMNEDSSPPDTKKYSRGRQLLQFDKSHRPAFYGVW 520

Query: 389 PKK 391
           P K
Sbjct: 521 PAK 523



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 63  VGKRFMRESVLCLSALQNSETYQSCRTDLMRASGKLAKALKEAEIRSLVDGTLQKNGTVK 122
           + +R M  S + ++AL+  E+       L++AS K+ KA  EA+IR LVDG LQKN    
Sbjct: 197 IHERIMAVSEM-IAALKKQESQPDYNDGLIKASAKVNKAFPEADIRLLVDGLLQKNSEDM 255

Query: 123 ADQEAKLEQKVLIKQL 138
             + A  E K+LIKQL
Sbjct: 256 DKKRASQENKLLIKQL 271


>Glyma18g48000.1 
          Length = 829

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 108/184 (58%), Gaps = 11/184 (5%)

Query: 211 AKMKRQNAIKKQASIMERFLKRSKTDSPC---QNEGTSIEETAPVLSGKKSEKMPEAVTM 267
           A++K++ +++KQASIMERFLKRSK        + +  S + TA  L   KSE + E+ T+
Sbjct: 332 AELKKKRSLQKQASIMERFLKRSKIIPSSPSSEKDIVSTKSTASDLPSSKSESLFESATL 391

Query: 268 AMDCTLSSNXXXXXXXXXKLHLSSWHHLGHAIRSNRKQHWSIRQKPKTELFKELKLTTAR 327
           +MDCTL+S+         K            I    KQ W +RQKP+TE+FKELKL+  +
Sbjct: 392 SMDCTLASSRDVMLEDIRK-------QFCFQILLKIKQRWGLRQKPRTEVFKELKLSAIK 444

Query: 328 ELSHDGELIVEKLESEWGEQSSDDRLCATNLESSLNDKKWKRRKKLLQFDKSHRPAFYGI 387
               D EL  EK     GE SSD   C  N +SS  D K+ R ++LLQFDKSHRPAFYG+
Sbjct: 445 TAVQDVELDTEKHVDRLGECSSDISSCPMNADSS-PDAKYSRGRQLLQFDKSHRPAFYGV 503

Query: 388 WPKK 391
           WP K
Sbjct: 504 WPAK 507



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 65  KRFMRESVLCLS----ALQNSETYQSCRTDLMRASGKLAKALKEAEIRSLVDGTLQKNGT 120
           +R + E ++ +S    AL+  E+       L++AS KL KA  EA+IR LVDG LQKN  
Sbjct: 197 RRRIHERIMAISEMIAALKKLESEPDYNQGLIKASAKLNKAFPEADIRLLVDGLLQKNSE 256

Query: 121 VKADQEAKLEQKVLIKQL 138
               +    E K+LIKQL
Sbjct: 257 DMDKKRTSQENKLLIKQL 274