Jatropha Genome Database

JcCB0235721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0235721.10 - phase: 0 /partial
         (530 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g01270.1                                                       146   6e-35
Glyma07g04690.1                                                       123   5e-28

>Glyma16g01270.1 
          Length = 1162

 Score =  146 bits (368), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 113/198 (57%), Gaps = 9/198 (4%)

Query: 1   HFADLLAAQFCSLMIREGYLVEDN-IQPKPTQMNIASTSQPIAVGIPPNNSAAEVQKYNE 59
           H ADLLA QFCSLM+REGY+ ED+ IQ KP ++N+   +Q       PNN+  E+Q+Y E
Sbjct: 633 HSADLLAQQFCSLMVREGYVKEDDRIQLKPNRVNLPLGNQSTT----PNNAVVEMQQYGE 688

Query: 60  AVSAQAPNDI-KPSLSGNASINPSQNLLANARMLPPGNPKALPMSQGLVSAVSMAARXXX 118
            +  Q+ N++ KP+   NA IN SQNLL N RMLPPG+P+AL MSQGL+S VSMA+R   
Sbjct: 689 VIPGQSSNEVAKPASGSNAPINLSQNLLTNPRMLPPGSPQALQMSQGLLSGVSMASRPQQ 748

Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXRSAMMLPSNSLSHLNA 175
                                                       RS MML +N LSHLN 
Sbjct: 749 MDSQQAVQQQQQQQQQQQQQQQQQQQQLQQNQHTLIQQQNPQFQRSPMMLGTNQLSHLNP 808

Query: 176 LGQNSNMQLGNHMVNKPS 193
           +GQNSNM LGNHM+NKPS
Sbjct: 809 VGQNSNMPLGNHMLNKPS 826



 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 12/111 (10%)

Query: 267  NVGQNSMNLGQASSITNVISQQIRAGQMSQAQAAFLTSKLRM----RPSILGPSQSGIAG 322
            N+GQ+ MNL Q S+ITN ISQQ R+G ++ A +A L S+LR+    R S+LG  QS +A 
Sbjct: 898  NMGQSPMNLSQTSNITNSISQQFRSGSLNAAASADLISRLRLVHSNRQSMLGSPQSNLAS 957

Query: 323  MSGARQIQPGSA-SLSMLGQSLNRANMNPMQRSAIGPMGPPKLMAGVNLYV 372
            +SGARQI PG+  SLSMLG++      N MQR  IGPMGPPK+MAG+NLY+
Sbjct: 958  ISGARQIHPGATPSLSMLGRA------NTMQR-PIGPMGPPKMMAGMNLYM 1001



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 426  DPSSSLQAVVSPPQVGSPSTMVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGAIHA 485
            + +S LQ+VVSPPQVGSPS  V                              +SSGAIHA
Sbjct: 1039 ETTSQLQSVVSPPQVGSPSMGV-----PPLNQQTQQQASPQQMSQRTPMSPQMSSGAIHA 1093

Query: 486  MSAGNPEACPASPQLSSQTLGSVGSI 511
            MSAGNPEACPASPQLSSQTLGSV ++
Sbjct: 1094 MSAGNPEACPASPQLSSQTLGSVTTL 1119


>Glyma07g04690.1 
          Length = 1132

 Score =  123 bits (308), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 109/197 (55%), Gaps = 13/197 (6%)

Query: 4   DLLAAQFCSL-----MIREGYLVEDN-IQPKPTQMNIASTSQPIAVGIPPNNSAAEVQKY 57
           D +AA+   L     M+REG++ ED+ IQ KP ++N+   +Q       PNN+  E+Q+Y
Sbjct: 621 DYVAAEDHLLTLPNTMVREGFVKEDDRIQLKPNRVNLPLGNQSTT----PNNAVVEMQQY 676

Query: 58  NEAVSAQAPNDI-KPSLSGNASINPSQNLLANARMLPPGNPKALPMSQGLVSAVSMAARX 116
            EA+  Q+ N++ KP+   NA +N SQNL+ N RMLPPGNP+AL MSQGL+S VSMA+R 
Sbjct: 677 GEAIPGQSSNEVAKPTSGSNAPVNLSQNLVTNPRMLPPGNPQALQMSQGLLSGVSMASR- 735

Query: 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAMMLPSNSLSHLNAL 176
                                                      RS MML +N LSHLN +
Sbjct: 736 -PQQMDSQQAIQQQQQQQQQQQQQQQLQQNQHTLIQQQNPQFQRSPMMLGTNQLSHLNPV 794

Query: 177 GQNSNMQLGNHMVNKPS 193
           GQNSNM LGNHM+N+PS
Sbjct: 795 GQNSNMPLGNHMLNRPS 811



 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 80/111 (72%), Gaps = 12/111 (10%)

Query: 267 NVGQNSMNLGQASSITNVISQQIRAGQMSQAQAAFLTSKLRM----RPSILGPSQSGIAG 322
           N+GQN MNL Q S+ITN ISQQ R+G ++ A +A L SKLR+    R  +LG SQS IA 
Sbjct: 890 NMGQNPMNLSQTSNITNSISQQFRSGSINAAASADLLSKLRLVHQNRQGMLGSSQSNIAS 949

Query: 323 MSGARQIQP-GSASLSMLGQSLNRANMNPMQRSAIGPMGPPKLMAGVNLYV 372
           +SGARQI P G+ SLSMLG++      N MQR  IGPMGPPK+MAG+NLY+
Sbjct: 950 ISGARQIHPGGTPSLSMLGRA------NTMQR-PIGPMGPPKIMAGMNLYM 993



 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 66/101 (65%), Gaps = 5/101 (4%)

Query: 426  DPSSSLQAVVSPPQVGSPSTMVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGAIHA 485
            + +S LQAVVSPPQVGSPS  +                              +SSGAIHA
Sbjct: 1034 ETTSQLQAVVSPPQVGSPSMGI-----PPMNQQAQQQASPQQMSQRTPMSPQMSSGAIHA 1088

Query: 486  MSAGNPEACPASPQLSSQTLGSVGSITNSPMELQGVNKSNS 526
            M+AGNPEACPASPQLSSQTLGSV SITNSPM++QGVNKSNS
Sbjct: 1089 MNAGNPEACPASPQLSSQTLGSVSSITNSPMDMQGVNKSNS 1129