Jatropha Genome Database

JcCB0234781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234781.10 + phase: 0 
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g07140.1                                                       117   5e-27
Glyma19g23600.1                                                        83   1e-16

>Glyma16g07140.1 
          Length = 326

 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 59  DSIFLKAPNSNAKLDAAPSSSVTMPMSFMTGSIVGKRFYKQVTTREADDGNGWTVMLDYR 118
           + +++K P    K   +PSS+VTMPMSFMTGSIVGKRFYK+V TREADDGNGWTVMLDYR
Sbjct: 55  EKVYVKPPAGKWK--PSPSSTVTMPMSFMTGSIVGKRFYKEVKTREADDGNGWTVMLDYR 112

Query: 119 TLKTPSKRXXXXXXXXXXXXXXXEWEYQ 146
           TLKTPSKR               EWEYQ
Sbjct: 113 TLKTPSKRPLKLPSLPLAKAIAAEWEYQ 140


>Glyma19g23600.1 
          Length = 98

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 42/59 (71%)

Query: 88  TGSIVGKRFYKQVTTREADDGNGWTVMLDYRTLKTPSKRXXXXXXXXXXXXXXXEWEYQ 146
           TG IVGKRFYK++ T+EADDGNGWTVMLDYRTLKTPSKR               +WEYQ
Sbjct: 40  TGLIVGKRFYKELKTQEADDGNGWTVMLDYRTLKTPSKRPFKLPSLPLAKAIAAKWEYQ 98