Jatropha Genome Database

JcCB0234681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234681.10 + phase: 0 /partial
         (152 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g00400.1                                                        87   9e-18

>Glyma20g00400.1 
          Length = 330

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 86/176 (48%), Gaps = 42/176 (23%)

Query: 1   YRMQQIIERYQKVKGTSIPE--HDS---------------------RMKRYMGEDMSSIP 37
           +RM+QIIE+YQ  KGT I E  HD                       ++RY+GEDM  + 
Sbjct: 62  FRMEQIIEQYQISKGTPIAERGHDHPREEFFHNMAMLRQQTIRLELEIQRYLGEDMRGLQ 121

Query: 38  FXXXXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVAMEY 97
           +            SVA++RNR+NELLQQQ++NL RKE                H+  +E+
Sbjct: 122 YEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKEH---------------HQAVLEF 166

Query: 98  QHATLEAKPVEHQQVLDQFPFCGE--PSSVLQLGT-IHSQIHSYHLQLAQPNLQGS 150
           Q A    +  +   V+D F F  E    S+LQL + +    H Y LQLAQPN+Q S
Sbjct: 167 QKAAATVEASKPMYVMDHFSFFEEQPAGSILQLASPMLPHFHPY-LQLAQPNIQDS 221