Jatropha Genome Database

JcCB0234411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234411.10 - phase: 0 /pseudo
         (80 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01460.1                                                        81   2e-16
Glyma06g01510.1                                                        80   4e-16
Glyma12g04810.1                                                        80   5e-16
Glyma11g12600.1                                                        80   7e-16

>Glyma04g01460.1 
          Length = 377

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 47/75 (62%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV ELK RH+AATETVN                        +AGYAR+QG+ PV+FGPT
Sbjct: 1  MSVTELKERHLAATETVNSLRERLKERRLSLLDTD-------IAGYARSQGRSPVTFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGH GKV
Sbjct: 54 DLVCCRTLQGHAGKV 68


>Glyma06g01510.1 
          Length = 377

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV ELK RH+AATET+N                        +AGYAR+QG+ PV+FGPT
Sbjct: 1  MSVTELKERHLAATETINSLRERLKERRLSLLDTD-------IAGYARSQGRAPVTFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCR LQGHTGKV
Sbjct: 54 DLVCCRALQGHTGKV 68


>Glyma12g04810.1 
          Length = 377

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 47/75 (62%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV ELK RH AAT+TVN                        V+GYAR+QG+ PV+FGPT
Sbjct: 1  MSVTELKERHSAATDTVNNLRHRLKQKRLSLLDTD-------VSGYARSQGRTPVTFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 54 DLVCCRTLQGHTGKV 68


>Glyma11g12600.1 
          Length = 377

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV ELK RH AAT+TVN                        ++GYAR+QG+ PV+FGPT
Sbjct: 1  MSVTELKERHSAATDTVNNLRHRLKQKRLSLLDTD-------ISGYARSQGRTPVTFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 54 DLVCCRTLQGHTGKV 68