Jatropha Genome Database

JcCB0231591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231591.10 + phase: 1 /pseudo/partial
         (158 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g06480.1                                                       144   3e-35
Glyma04g06440.1                                                       142   2e-34

>Glyma06g06480.1 
          Length = 1124

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 100/167 (59%), Gaps = 18/167 (10%)

Query: 1    EKVCNDRTGEMVHSLIFMGPTFYQQLVHMA*DKVKFTQHGAC-PSTYQAVCCRPEAFWWY 59
            E+V N RTGEMV SLIFMGPTFYQ+L HM+ DKVKF   G   P T Q V  R       
Sbjct: 967  ERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRF---- 1022

Query: 60   QVW*DGA*LPHSSR--CICKPA*ATFYSQRL--LADAYL----PDCKNFTNVIERTVPQS 111
                 G       R   I   A A  Y +RL  L+D+        CKN  NVI R V   
Sbjct: 1023 ----GGIKFGEMERDCLIAHGASANLY-ERLFTLSDSSQIHICSKCKNVANVILRPVSGG 1077

Query: 112  RKIKAPYCRICESADDTVKVNLPYGAKVLCQELFSMGISLKFETQLC 158
            RKI+ PYCR CESADD V  ++PYGAK+LCQELFSMGI+LKFETQLC
Sbjct: 1078 RKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1124


>Glyma04g06440.1 
          Length = 1086

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 99/167 (59%), Gaps = 18/167 (10%)

Query: 1    EKVCNDRTGEMVHSLIFMGPTFYQQLVHMA*DKVKFTQHGAC-PSTYQAVCCRPEAFWWY 59
            E+V N RTGEMV SLIFMGPTFYQ+L HM+ DKVKF   G   P T Q V  R       
Sbjct: 929  ERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRF---- 984

Query: 60   QVW*DGA*LPHSSR--CICKPA*ATFYSQRL--LADAYL----PDCKNFTNVIERTVPQS 111
                 G       R   I   A A  Y +RL  L+D+        CK   NVI R V   
Sbjct: 985  ----GGIKFGEMERDCLIAHGASANLY-ERLFTLSDSSQIHICSKCKKVANVILRPVSGG 1039

Query: 112  RKIKAPYCRICESADDTVKVNLPYGAKVLCQELFSMGISLKFETQLC 158
            RKI+ PYCR CESADD V  ++PYGAK+LCQELFSMGI+LKFETQLC
Sbjct: 1040 RKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1086