Jatropha Genome Database

JcCB0231181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.20 - phase: 1 /partial
         (133 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02820.1                                                       116   5e-27
Glyma02g05570.1                                                        93   6e-20
Glyma06g02830.1                                                        91   3e-19
Glyma02g05580.1                                                        86   1e-17
Glyma01g37260.1                                                        75   2e-14

>Glyma04g02820.1 
          Length = 430

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 75/102 (73%), Gaps = 3/102 (2%)

Query: 33  KDVNYYKNLIQQHGGERQETPHQYSSRYSHQIGSNPELV--NPKSRDAKPKIMKPCIYFN 90
           +DVNYYK+LIQQHGG ++  P+  S R   Q  +N E    N + + +KPKIMKPCI+FN
Sbjct: 329 RDVNYYKSLIQQHGGHKETLPYS-SKRQIPQAATNYETTSYNHRGKVSKPKIMKPCIFFN 387

Query: 91  SSRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKMDREIS 132
           SSRGCR+GANCAYQHD S   R +++  +Q++KRMKMD EIS
Sbjct: 388 SSRGCRNGANCAYQHDASFQPRGNTVSGIQSSKRMKMDHEIS 429


>Glyma02g05570.1 
          Length = 489

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 33  KDVNYYKNLIQQHGGERQETPHQYSS-RYSHQIGSNPELVNPKSRDAKPKIMKPCIYFNS 91
           K  NYYKNLI+QHG ++Q+    +   R+S+     P + N K R+ KPKI+KPCIYF S
Sbjct: 391 KRANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKP-VHNIKQREVKPKILKPCIYFKS 449

Query: 92  SRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKMDRE 130
            RGCR+G+NC+YQHD S+ + + ++   Q+AKR+K+  E
Sbjct: 450 PRGCRNGSNCSYQHDVSAQEGAGNVLRAQSAKRLKLGGE 488


>Glyma06g02830.1 
          Length = 387

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 33  KDVNYYKNLIQQHGGERQETPHQYSSRYSHQIGSNPELV--NPKSRDAKPKIMKPCIYFN 90
           ++VNYYK+LIQQHGG++QET    S R   Q  +N E    N + + +KPKIMKPCI+FN
Sbjct: 309 RNVNYYKSLIQQHGGDKQETLPYSSKRQIPQSATNYETTSYNHRGKVSKPKIMKPCIFFN 368

Query: 91  SSRGCRHGANCAYQHDTS 108
           +S+GCR GANC Y HD S
Sbjct: 369 TSKGCRKGANCDYHHDAS 386


>Glyma02g05580.1 
          Length = 487

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 2/97 (2%)

Query: 32  VKDVNYYKNLIQQHGGERQETPHQYSS-RYSHQIGSNPELVNPKSRDAKPKIMKPCIYFN 90
           VKD NYYKNLI+QHG ++Q+    +   R+S+     P + N K  + K KI KPCIYF 
Sbjct: 388 VKDANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKP-VHNIKQGEVKHKIQKPCIYFK 446

Query: 91  SSRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKM 127
           S RGCR+G+NC YQHD S    + ++   Q+AKR+K+
Sbjct: 447 SPRGCRNGSNCPYQHDVSDQWGAGNVLGAQSAKRLKL 483


>Glyma01g37260.1 
          Length = 387

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 10/100 (10%)

Query: 32  VKDVNYYKNLIQQHGGERQETPHQYSSRYSHQIGSNPELVNPKSRDAKPKIMKPCIYFNS 91
           VKDVNYY++L+++HG  +Q    + S R       N + +     + K K  KPCIYF +
Sbjct: 298 VKDVNYYRSLVKEHGTHKQ---GKKSLR-------NLQGLKRSQGEVKFKSKKPCIYFGT 347

Query: 92  SRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKMDREI 131
            RGCR+G++C +QHD  +   + ++   QNAKR+K+ REI
Sbjct: 348 PRGCRNGSDCPFQHDMPNQWEAGNVLMAQNAKRLKVGREI 387