Jatropha Genome Database

JcCB0231181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.10 - phase: 0 
         (236 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02820.1                                                       196   1e-50
Glyma04g02810.1                                                       188   5e-48
Glyma09g33930.1                                                        79   3e-15
Glyma07g30390.1                                                        54   2e-07

>Glyma06g02820.1 
          Length = 128

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 104/121 (85%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60
           MLKFLS+V+IEFNALDPR ASCMEFLAQCN+RKAKESNPAC+V VKR  ++  PQITVTF
Sbjct: 1   MLKFLSRVKIEFNALDPRTASCMEFLAQCNSRKAKESNPACEVEVKRVREERAPQITVTF 60

Query: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKV 120
           VNGVEEVFD T  PAQ+IR +ILEKGQ LETEQMFREAGE WPV+IP+EEL   AP TK 
Sbjct: 61  VNGVEEVFDATATPAQSIRNLILEKGQHLETEQMFREAGEPWPVVIPDEELSQIAPPTKP 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>Glyma04g02810.1 
          Length = 128

 Score =  188 bits (477), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 91/121 (75%), Positives = 102/121 (84%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60
           MLKFLS+V+IEFNALDPR ASC+EFLAQCN+R+AKESNP C+V VKR  ++  PQITVTF
Sbjct: 1   MLKFLSRVKIEFNALDPRTASCIEFLAQCNSRRAKESNPTCEVDVKRVREERAPQITVTF 60

Query: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKV 120
           VNGVEEVFD T  PAQ+IR +ILEKGQ LETEQMFREAGE WPVIIP+EEL   A  TK 
Sbjct: 61  VNGVEEVFDATATPAQSIRNLILEKGQHLETEQMFREAGEPWPVIIPDEELSQIALPTKP 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>Glyma09g33930.1 
          Length = 44

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 41/43 (95%)

Query: 1  MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQV 43
          MLKFLS+V+IEFNAL+PR+ASCMEFLAQCN+RKAKE N AC+V
Sbjct: 1  MLKFLSRVKIEFNALNPRMASCMEFLAQCNSRKAKEWNSACEV 43


>Glyma07g30390.1 
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 28/37 (75%)

Query: 54  PQITVTFVNGVEEVFDGTKIPAQTIRTMILEKGQLLE 90
           PQITVTFVNGVEEVFD T   AQ+IR +ILE  + L 
Sbjct: 170 PQITVTFVNGVEEVFDATATAAQSIRNLILENSRRLR 206