Jatropha Genome Database

JcCB0231061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231061.20 - phase: 0 /partial/short
         (43 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g30360.2                                                        76   8e-15
Glyma02g30360.1                                                        73   7e-14
Glyma10g11850.1                                                        72   1e-13
Glyma10g11850.2                                                        72   2e-13
Glyma10g11850.3                                                        72   2e-13

>Glyma02g30360.2 
          Length = 408

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1   EAALAKTRELKKLCESTLSSMFDGRPVNIIGEINTLLNSGVNA 43
           +AA+AKT+ELKKLCESTLSSMFDGRPVNIIGEIN +L SG+ A
Sbjct: 366 DAAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGLGA 408


>Glyma02g30360.1 
          Length = 554

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1   EAALAKTRELKKLCESTLSSMFDGRPVNIIGEINTLLNSGVNA 43
           +AA+AKT+ELKKLCESTLSSMFDGRPVNIIGEIN +L SG+ A
Sbjct: 512 DAAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGLGA 554


>Glyma10g11850.1 
          Length = 577

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 39/43 (90%)

Query: 1   EAALAKTRELKKLCESTLSSMFDGRPVNIIGEINTLLNSGVNA 43
           + A+AKT+ELKKLCESTLSSMFDGRPVNIIGEIN +L SG+ A
Sbjct: 535 DVAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGIGA 577


>Glyma10g11850.2 
          Length = 555

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 39/43 (90%)

Query: 1   EAALAKTRELKKLCESTLSSMFDGRPVNIIGEINTLLNSGVNA 43
           + A+AKT+ELKKLCESTLSSMFDGRPVNIIGEIN +L SG+ A
Sbjct: 513 DVAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGIGA 555


>Glyma10g11850.3 
          Length = 554

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 39/43 (90%)

Query: 1   EAALAKTRELKKLCESTLSSMFDGRPVNIIGEINTLLNSGVNA 43
           + A+AKT+ELKKLCESTLSSMFDGRPVNIIGEIN +L SG+ A
Sbjct: 512 DVAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGIGA 554