Jatropha Genome Database

JcCB0231041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231041.10 - phase: 0 /partial
         (202 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g06710.1                                                       302   2e-82
Glyma10g34420.1                                                       188   4e-48
Glyma20g33150.1                                                       144   9e-35

>Glyma18g06710.1 
          Length = 319

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/187 (76%), Positives = 161/187 (86%)

Query: 1   KLNRKLVHISIGLVFMLCWPLFSSGHRGAILAALTPGINIFRMLILGLGIWKDEATVKSM 60
           KLNRKLVHISIGL+FMLCWPLFS+    +  AAL PGINIFRML++GLGI KDEATVKSM
Sbjct: 118 KLNRKLVHISIGLIFMLCWPLFSTETWASFFAALIPGINIFRMLVIGLGILKDEATVKSM 177

Query: 61  SRFGDHRELLKGPLYYALTITLTCAIYWRTSPITIAAICNLCAGDGMADIVGRRFGNHKL 120
           SRFGD+RELLKGPLYYA TITL   IYWRTSPI+IAAICNLCAGDGMADIVGRR G  K+
Sbjct: 178 SRFGDYRELLKGPLYYAATITLAAIIYWRTSPISIAAICNLCAGDGMADIVGRRLGGEKI 237

Query: 121 PYNTNKSIAGSVAMALAGFLASITYMHYFASFGYVRESWEMTMGFLVVSIASAIVESLPI 180
           PYN NKS AGS+AMA AGFL SI YM YF+SFG++  SW++ +GFL+VSI +A VESLPI
Sbjct: 238 PYNKNKSFAGSIAMATAGFLTSIGYMWYFSSFGFIEGSWKLVLGFLLVSIVTAFVESLPI 297

Query: 181 STQLDDN 187
           ST+LDDN
Sbjct: 298 STELDDN 304


>Glyma10g34420.1 
          Length = 302

 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 132/187 (70%), Gaps = 1/187 (0%)

Query: 2   LNRKLVHISIGLVFMLCWPLFSSGHRGAILAALTPGINIFRMLILGLGIWKDEATVKSMS 61
           L+RKLVHI  GL+F++ WP+FS+  +    AA  P +N  R+L+ GL +  DE  +KS++
Sbjct: 99  LSRKLVHILSGLLFLVSWPIFSNSPKARYFAAFVPLVNCLRLLVNGLSLASDEGLIKSVT 158

Query: 62  RFGDHRELLKGPLYYALTITLTCAIYWRTSPITIAAICNLCAGDGMADIVGRRFGNHKLP 121
           R GD  ELL+GPLYY L + L+  ++WR SPI + ++  +CAGDG+ADI+GRR+G+ K+P
Sbjct: 159 REGDPLELLRGPLYYVLILILSALVFWRESPIGVISLAMMCAGDGIADIIGRRYGSMKIP 218

Query: 122 YNTNKSIAGSVAMALAGFLASITYMHYFASFGYVRESWEMTMGFLV-VSIASAIVESLPI 180
           YN +KS+AGS++M + GFL SI  ++Y++  G+V+  W  T+  +  +S  + +VESLPI
Sbjct: 219 YNEHKSLAGSMSMLVFGFLVSIGMLYYYSVLGHVQLDWASTLPRVAFISFVATLVESLPI 278

Query: 181 STQLDDN 187
           +  +DDN
Sbjct: 279 TKVVDDN 285


>Glyma20g33150.1 
          Length = 230

 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 92/129 (71%)

Query: 2   LNRKLVHISIGLVFMLCWPLFSSGHRGAILAALTPGINIFRMLILGLGIWKDEATVKSMS 61
           L+RKLVHI  GL+F++ WP+FS+  +    AA  P +N  R+L+ GL +  DE  +KS++
Sbjct: 95  LSRKLVHILSGLLFLVSWPIFSNSPKARYFAAFVPLVNCLRLLVNGLSLASDEGLIKSVT 154

Query: 62  RFGDHRELLKGPLYYALTITLTCAIYWRTSPITIAAICNLCAGDGMADIVGRRFGNHKLP 121
           R GD  ELL+GPLYY L +     ++WR SP+ + ++  +CAGDG+ADI+GRR+G+ K+P
Sbjct: 155 REGDPLELLRGPLYYVLILIFCALVFWRESPVGVVSLAMMCAGDGIADIIGRRYGSLKIP 214

Query: 122 YNTNKSIAG 130
           YN +KS+AG
Sbjct: 215 YNQHKSLAG 223