Jatropha Genome Database

JcCB0230941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0230941.10 - phase: 1 /pseudo/partial
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g35950.2                                                       234   3e-62
Glyma12g35950.1                                                       233   7e-62
Glyma13g34430.1                                                       229   1e-60
Glyma16g34290.1                                                        52   2e-07
Glyma11g33240.1                                                        50   1e-06

>Glyma12g35950.2 
          Length = 359

 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 123/140 (87%)

Query: 10  LGGLKSLAEREGVSDRVSFITSCSTVERNELLSQCLSVIYTPKDEHFGIVPLEAMAAYKP 69
           L  LK LAE+EGVS+++ FITSCST ERNELLS+CL V+YTPKDEHFGIVPLEAMAAYKP
Sbjct: 220 LEELKDLAEKEGVSNKIRFITSCSTAERNELLSECLCVLYTPKDEHFGIVPLEAMAAYKP 279

Query: 70  VIACNSGGPTETVKDGVTGFLCESTPKAFSLAMAKLIQDPQMAKRMGEQARQHVTESFST 129
           VIACNSGGP E++K+GVTGFLC+ TP+ FSLAMAKLI DPQ A+RMG +AR+HV ESFST
Sbjct: 280 VIACNSGGPVESIKNGVTGFLCDPTPQEFSLAMAKLINDPQEAERMGREARRHVAESFST 339

Query: 130 KIFGQHLNQYLVDIASIKED 149
           K FGQHLN+YLVDI   KED
Sbjct: 340 KSFGQHLNRYLVDIHRGKED 359


>Glyma12g35950.1 
          Length = 407

 Score =  233 bits (593), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 123/140 (87%)

Query: 10  LGGLKSLAEREGVSDRVSFITSCSTVERNELLSQCLSVIYTPKDEHFGIVPLEAMAAYKP 69
           L  LK LAE+EGVS+++ FITSCST ERNELLS+CL V+YTPKDEHFGIVPLEAMAAYKP
Sbjct: 268 LEELKDLAEKEGVSNKIRFITSCSTAERNELLSECLCVLYTPKDEHFGIVPLEAMAAYKP 327

Query: 70  VIACNSGGPTETVKDGVTGFLCESTPKAFSLAMAKLIQDPQMAKRMGEQARQHVTESFST 129
           VIACNSGGP E++K+GVTGFLC+ TP+ FSLAMAKLI DPQ A+RMG +AR+HV ESFST
Sbjct: 328 VIACNSGGPVESIKNGVTGFLCDPTPQEFSLAMAKLINDPQEAERMGREARRHVAESFST 387

Query: 130 KIFGQHLNQYLVDIASIKED 149
           K FGQHLN+YLVDI   KED
Sbjct: 388 KSFGQHLNRYLVDIHRGKED 407


>Glyma13g34430.1 
          Length = 318

 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 119/140 (85%)

Query: 10  LGGLKSLAEREGVSDRVSFITSCSTVERNELLSQCLSVIYTPKDEHFGIVPLEAMAAYKP 69
           L  LK LAE+EGVS+ + FITSCST ERNELLS+CL V+YTPKDEHFGIVPLEAMAAYKP
Sbjct: 179 LEELKDLAEKEGVSNNIKFITSCSTAERNELLSECLCVLYTPKDEHFGIVPLEAMAAYKP 238

Query: 70  VIACNSGGPTETVKDGVTGFLCESTPKAFSLAMAKLIQDPQMAKRMGEQARQHVTESFST 129
           VIACNSGGP E++K+GVTGFLC+ TP  FSLAMAKLI DPQ A  MG +AR+HV ESFST
Sbjct: 239 VIACNSGGPVESIKNGVTGFLCDPTPLEFSLAMAKLISDPQEADNMGREARRHVVESFST 298

Query: 130 KIFGQHLNQYLVDIASIKED 149
           K FGQHLN+YLVDI   KED
Sbjct: 299 KSFGQHLNRYLVDIHRGKED 318


>Glyma16g34290.1 
          Length = 910

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 16  LAEREGVSDRVSFITSCSTVERNELLSQCLS-----VIYTPKDEHFGIVPLEAMAAYKPV 70
           L +   +  +  +I + +   RN  L +C+S      +     E FG+  +EAM    P 
Sbjct: 628 LMKEYNLKGQFRWIAAQTDRYRNSELYRCISDTKGAFVQPALYEAFGLTVIEAMNCGLPT 687

Query: 71  IACNSGGPTETVKDGVTGFLC------ESTPKAFSLAMAKLIQDPQMAKRMGEQARQHVT 124
            A N GGP E + DGV+GF        ES+ K       K   D Q   RM +   Q + 
Sbjct: 688 FATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADF-FEKCKTDSQHWNRMSKAGLQRIN 746

Query: 125 ESFSTKIFGQHL 136
           E ++ KI+ + +
Sbjct: 747 ECYTWKIYAKKV 758


>Glyma11g33240.1 
          Length = 802

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 54  EHFGIVPLEAMAAYKPVIACNSGGPTETVKDGVTGFLC-----ESTPKAFSLAMAKLIQD 108
           E FG+  +EAM    P  A N GGP E + DG++GF       E +    +    K +QD
Sbjct: 679 EAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGISGFHIDPHNGEESSNKIADFFEKCLQD 738

Query: 109 PQMAKRMGEQARQHVTESFSTKIFGQHL 136
                R+     Q + E ++ KI+   +
Sbjct: 739 SAHWNRISAAGLQRINECYTWKIYANKM 766