Jatropha Genome Database

JcCB0229021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229021.10 + phase: 0 /pseudo/partial
         (307 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g43200.1                                                        94   3e-19
Glyma07g18340.1                                                        84   1e-16
Glyma03g07580.1                                                        75   9e-14
Glyma01g29670.1                                                        57   3e-08
Glyma18g06960.1                                                        51   1e-06
Glyma14g37340.1                                                        50   3e-06

>Glyma18g43200.1 
          Length = 410

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 15/140 (10%)

Query: 44  RLMGLDSLPDTNRIPTNGNT---VTRSRSVNFMDYLFEFD-LSQAHHRRVK-TSLSFRDV 98
           RLMGLDSLP T  +    NT   + RSRSVNF+DYL +FD  SQA+H +VK TS SFR+V
Sbjct: 64  RLMGLDSLPSTKLVSNTNNTPDSIPRSRSVNFVDYLRKFDTTSQANHHQVKTTSASFREV 123

Query: 99  PTL--QNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKKEEKGA-----VDVRK 151
           P+L     KNND  + Y +N E   +   +  RK E+GL ES +++++G+     V V K
Sbjct: 124 PSLLQHKNKNNDLVVFYWNN-ESEDQEVVSFLRKQEMGLGESRQRKKQGSKNKEIVSVTK 182

Query: 152 EKKNQRNNNLKISKLKDEPR 171
           E+ + +    KISK ++EPR
Sbjct: 183 ERSHTKRK--KISKFENEPR 200


>Glyma07g18340.1 
          Length = 407

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 19/134 (14%)

Query: 44  RLMGLDSLPDTNRIPTNGNT----VTRSRSVNFMDYLFEFDLSQAHHRRVKTSLSFRDVP 99
           RLMGLDSLP+TN + +N NT    V RSRSVNF+DYL +FD SQ +  +VKTS SFR+VP
Sbjct: 66  RLMGLDSLPNTN-LASNTNTTLHSVPRSRSVNFVDYLLKFDTSQPN--QVKTSASFREVP 122

Query: 100 TL--QNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKKEEKGAVDVRKEKKNQR 157
           +L     KN+D  + Y D+ E   +   +  RK E+G       + K   +V KE+ + +
Sbjct: 123 SLLQHKNKNHDLVVFYWDD-ESEDQEVVSFLRKQEMG-------KNKEIANVMKERNHTK 174

Query: 158 NNNLKISKLKDEPR 171
               KISK ++EPR
Sbjct: 175 RK--KISKFENEPR 186


>Glyma03g07580.1 
          Length = 430

 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 21/146 (14%)

Query: 44  RLMGLDSLPDTNRIPTNG-----NTVTRSRSVNFMDYLFEFDLSQ-AHHRRVKTSLSFRD 97
           RLMGLDSLP+   +   G     ++V RSRSVNF+DYL EFD S  + HRRVKTS SFR+
Sbjct: 73  RLMGLDSLPNPKWVVKCGSGSIPDSVPRSRSVNFVDYLLEFDASHVSSHRRVKTSTSFRE 132

Query: 98  VPTL----QNQKNNDFFLLYLD---NIEKTKKTRPNKFRKAEV----GLEESNKKEEKGA 146
           VP+L    +    N+ F+  +D   N+ + K+ R N+ R+ E       + SNK +E  +
Sbjct: 133 VPSLVQNQKGNNGNNLFVFCMDGDGNMREEKEGR-NEMREVEELRQRKRQGSNKNKE--S 189

Query: 147 VDVRKEKKNQRNNNLKISKLKDEPRK 172
           V V+KE KNQ   N KISKLK+EPR+
Sbjct: 190 VSVKKE-KNQGKKNKKISKLKNEPRR 214


>Glyma01g29670.1 
          Length = 386

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 100/197 (50%), Gaps = 25/197 (12%)

Query: 44  RLMGLDSLPDTNRIPTNG--NTVTRSRSVNFMDYLFEFDLSQ-AHHRRVKTSLSFRDVPT 100
           RLMGLDSLP+   +   G  ++V RSRSVNF+DYL EFD S  + HRR +    + +   
Sbjct: 70  RLMGLDSLPNPKWVVKCGTPDSVPRSRSVNFVDYLLEFDASHVSSHRRNQKGNGYGNGNN 129

Query: 101 LQNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKKEEKGAVDVRKEKKNQRNNN 160
           L        F +  DN  + ++   N+ R+ E   +   +K +K +V V+KE +NQ   N
Sbjct: 130 LF------VFCMAGDNNMREEQEGRNEMREVE---KLRQRKRQKESVSVKKE-RNQGKKN 179

Query: 161 LKISKLKDEPRKQVMHDNKQFSRPGSCKGGQVSSGFVSPKKVKDRR------VPKGKSKC 214
            KISKLK+EPR+ V   +K  SR G    G+ SS   S       R      +P    K 
Sbjct: 180 KKISKLKNEPRR-VPSSSKNGSR-GRNHHGECSSSCSSRHNGASSRTRFNTSLPNKNKKG 237

Query: 215 AVKP----INQKEVLVE 227
            V+P     NQ+ VL E
Sbjct: 238 VVEPNIRNRNQQSVLKE 254


>Glyma18g06960.1 
          Length = 338

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 44  RLMGLDSLPDTNRIPTNG--NTVTRSRSVNFMDYLFEFD-LSQAHHRRVKTSLSFRDVPT 100
           RLMGL+++     IP     N+++RSRS+N +DYL   + + +  H+RVK++LSFR+ PT
Sbjct: 92  RLMGLETI----EIPCGSKPNSLSRSRSMNSVDYLGVCNGMEEVLHKRVKSTLSFREAPT 147

Query: 101 LQNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKK 141
               +++ F  L  +      +   +  RK E G  E  +K
Sbjct: 148 FLLHESDKFLELNFEGEGGEGREFKSNGRKREPGCAELKQK 188


>Glyma14g37340.1 
          Length = 395

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 44  RLMGLDSLPDTNRIPTNGNTVTRSRS----VNFMDYLFEFDLSQAHHRRVKTSLSFRDVP 99
           RLMGL+S+ + +   TN  T + S      +N MDYL E+   +  H+R K+S SFR+VP
Sbjct: 104 RLMGLESMVERDTNTTNEATSSSSLPRSKSMNSMDYLGEYKRMEGLHKRAKSS-SFREVP 162

Query: 100 TLQNQKNNDFFLLYLDN 116
           T    +N +F +L  ++
Sbjct: 163 TFHLHENENFLVLSFES 179