Jatropha Genome Database

JcCB0224701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224701.10 + phase: 2 /partial
         (223 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g02380.1                                                       248   5e-66
Glyma12g17240.1                                                       172   3e-43
Glyma08g03230.1                                                       115   3e-26
Glyma01g29550.1                                                        83   2e-16

>Glyma11g02380.1 
          Length = 227

 Score =  248 bits (632), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 126/146 (86%)

Query: 78  SAVAGTTVVQVDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHS 137
           +A   T  +Q D    S+   K LPFR+GHGFDLHRLEPGYPLIIGGIN+PHDRGCEAHS
Sbjct: 46  AASTPTPSIQADKSPVSATPSKLLPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHS 105

Query: 138 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIQEAVRLMHEAGYDIGNLD 197
           DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKG  SSVFI E+VRLMHEAGY+IGNLD
Sbjct: 106 DGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIHESVRLMHEAGYEIGNLD 165

Query: 198 ATLILQRPKLSPHKEAIRENLCKLLG 223
           ATLILQRPKLSPHK+AI+ NL  LLG
Sbjct: 166 ATLILQRPKLSPHKDAIKANLSALLG 191


>Glyma12g17240.1 
          Length = 113

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 85/96 (88%)

Query: 86  VQVDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSDGDVLLHC 145
           +QVD    S+   K LPFR+GHGFDLHRLEPGYPLIIGGINVPH+RGCEAHSDGDVLLHC
Sbjct: 17  IQVDKSPVSATPSKLLPFRIGHGFDLHRLEPGYPLIIGGINVPHNRGCEAHSDGDVLLHC 76

Query: 146 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIQE 181
           VVDAILGALGLPDIGQIFPDSDPKWKG  SSVFI E
Sbjct: 77  VVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIHE 112


>Glyma08g03230.1 
          Length = 83

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 63/77 (81%)

Query: 83  TTVVQVDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSDGDVL 142
           T  +QV+    S+   K LPF++GHGFDL RL+PGYPLIIGGIN+PH+RGCEAH DGD+L
Sbjct: 6   TPSIQVNKSLVSATPSKLLPFQIGHGFDLRRLKPGYPLIIGGINIPHNRGCEAHFDGDIL 65

Query: 143 LHCVVDAILGALGLPDI 159
           LHCVVDAILG LGL DI
Sbjct: 66  LHCVVDAILGELGLLDI 82


>Glyma01g29550.1 
          Length = 148

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/37 (97%), Positives = 37/37 (100%)

Query: 135 AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWK 171
           AHSDGDVLLHC+VDAILGALGLPDIGQIFPDSDPKWK
Sbjct: 66  AHSDGDVLLHCIVDAILGALGLPDIGQIFPDSDPKWK 102