Jatropha Genome Database

JcCB0224001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224001.20 + phase: 0 /partial
         (118 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g22650.1                                                       107   4e-24
Glyma02g04800.1                                                       100   4e-22
Glyma02g04810.1                                                        98   2e-21
Glyma09g08170.1                                                        55   1e-08
Glyma09g08170.2                                                        54   3e-08

>Glyma16g22650.1 
          Length = 378

 Score =  107 bits (266), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 66/103 (64%)

Query: 16  KNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXX 75
           +NG +  GSE +G G L+ PED+AYD  + V+YT C DGWIKR                 
Sbjct: 59  RNGHMQDGSERVGEGHLEGPEDLAYDAAARVVYTGCEDGWIKRVTVNDSVVDSAVEDWVN 118

Query: 76  TGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
           TGGRPLGLVL  + ++IVADA KGLL++S + EIELL DE EG
Sbjct: 119 TGGRPLGLVLKPNGELIVADAEKGLLRVSSEKEIELLVDEFEG 161


>Glyma02g04800.1 
          Length = 367

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 64/102 (62%)

Query: 17  NGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXXT 76
           NG +  GSE +G G L+ PED+AYD  + V+YT C DGWIKR                 T
Sbjct: 49  NGHVRVGSEAMGEGHLEGPEDLAYDAAARVVYTGCEDGWIKRVTVNDSVLDSAVEDWVNT 108

Query: 77  GGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
           GGRPLGL L  + ++IVADA KGLL++S + EIELL DE EG
Sbjct: 109 GGRPLGLTLKPNGELIVADAEKGLLRVSSEREIELLVDEYEG 150


>Glyma02g04810.1 
          Length = 354

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 12/117 (10%)

Query: 2   PIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXX 61
           P HE + P             GSE + VG++  PED+AYD    VIYT C DGWIKR   
Sbjct: 16  PAHEWSRP------------IGSEVVAVGEVSGPEDLAYDKRRRVIYTGCEDGWIKRVTV 63

Query: 62  XXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                         TGGRPLGL L K  +++VADA+KGLL+++R  ++E+L DE EG
Sbjct: 64  TDSVADTVVKNWVNTGGRPLGLALEKSGELMVADAFKGLLRVTRKKKVEVLADEVEG 120


>Glyma09g08170.1 
          Length = 358

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 6   LTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXX 65
           L D  P  S K+ +L Q    LG G LK PED+  D E G +YT   DGWIKR       
Sbjct: 34  LLDIKPAPSTKDNQL-QNIIKLGEGLLKEPEDVVVDKE-GTLYTATRDGWIKRLRRNNGK 91

Query: 66  XXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                     T    LG+   K+  +IV D  KGLLK++ +    +L     G
Sbjct: 92  WENWKHIDSHT---LLGIATAKEGGLIVCDTSKGLLKVTEEDGFSVLVSHVNG 141


>Glyma09g08170.2 
          Length = 279

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 6   LTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXX 65
           L D  P  S K+ +L Q    LG G LK PED+  D E G +YT   DGWIKR       
Sbjct: 34  LLDIKPAPSTKDNQL-QNIIKLGEGLLKEPEDVVVDKE-GTLYTATRDGWIKRLRRNNGK 91

Query: 66  XXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                     T    LG+   K+  +IV D  KGLLK++ +    +L     G
Sbjct: 92  WENWKHIDSHT---LLGIATAKEGGLIVCDTSKGLLKVTEEDGFSVLVSHVNG 141