Jatropha Genome Database

JcCB0216831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216831.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g20600.1                                                       305   3e-83
Glyma04g33800.1                                                       233   2e-61

>Glyma06g20600.1 
          Length = 315

 Score =  305 bits (781), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/222 (66%), Positives = 165/222 (74%)

Query: 14  SHSKTVVLIWSVCIIVSFSLLQLALKXXXXXXXXXXXXXXXXXMEQRSRLYDKMARDLDE 73
           SHSKTVVLIW +     F+L Q+AL                    QRS+LYDKM RDLDE
Sbjct: 9   SHSKTVVLIWLISAFCFFTLFQMALYNSSQTPSSTSLDSPNSNTGQRSKLYDKMGRDLDE 68

Query: 74  KGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLYMSPEYSVPISETVKH 133
            G  FL+HGETSQSLSLSD+F LKDGS+TPVLK ANPPVRANVLY+S E+SVPI+E VK+
Sbjct: 69  HGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRANVLYLSTEFSVPIAEAVKN 128

Query: 134 IFHPYFDQAIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXXXXXXXXGLCPLKIVL 193
           +F+PYFD+AIWFQNSSLYHFSMFHASHHI+PVP                   LCPLKIVL
Sbjct: 129 VFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEAVVATLCPLKIVL 188

Query: 194 DRVVLTSTGVLLGCWQVISGPDPITIRSKLRTALPHAPEKQL 235
           DRVVLTSTGVLLGCWQV SG DPITIR+KL+ ALPHAPEKQL
Sbjct: 189 DRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQL 230


>Glyma04g33800.1 
          Length = 159

 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 122/151 (80%), Gaps = 1/151 (0%)

Query: 59  QRSRLYDKMARDLDEKGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLY 118
           QRS+LYDKM RDLDE G  FL+HGETSQSLSLSD+F LKDGS+TP LK ANPPVRANVLY
Sbjct: 10  QRSKLYDKMGRDLDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPALKPANPPVRANVLY 69

Query: 119 MSPEYSVPISETVKHIFHPYFDQAIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXX 178
           +S E+SVPI+E VK++F+PYFD+AIWFQNSSLYHFSMFHASHHI+PVP            
Sbjct: 70  LSTEFSVPIAEAVKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASS 129

Query: 179 XXXXXXGLCPLKIVLDRVVLTSTGVLLGCWQ 209
                  LCPLKIVLDR VLTSTGVLLGCWQ
Sbjct: 130 VEVVAATLCPLKIVLDR-VLTSTGVLLGCWQ 159