Jatropha Genome Database

JcCB0216511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216511.10 - phase: 0 
         (67 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28720.1                                                       112   1e-25
Glyma20g28720.6                                                       111   2e-25
Glyma20g28720.4                                                       110   2e-25
Glyma20g28720.3                                                       110   2e-25
Glyma20g28720.5                                                       110   2e-25
Glyma03g31280.1                                                        91   4e-19
Glyma19g34120.1                                                        90   6e-19
Glyma08g30150.1                                                        71   2e-13

>Glyma20g28720.1 
          Length = 342

 Score =  112 bits (280), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MGLE  +T SFM DFL KCGG AVIDGGFATELERHGADLND LWSAKCLISSPHLVR+V
Sbjct: 1  MGLEGKETPSFMRDFLDKCGGCAVIDGGFATELERHGADLNDELWSAKCLISSPHLVRRV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>Glyma20g28720.6 
          Length = 280

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MGLE  +T SFM DFL KCGG AVIDGGFATELERHGADLND LWSAKCLISSPHLVR+V
Sbjct: 1  MGLEGKETPSFMRDFLDKCGGCAVIDGGFATELERHGADLNDELWSAKCLISSPHLVRRV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>Glyma20g28720.4 
          Length = 340

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MGLE  +T SFM DFL KCGG AVIDGGFATELERHGADLND LWSAKCLISSPHLVR+V
Sbjct: 1  MGLEGKETPSFMRDFLDKCGGCAVIDGGFATELERHGADLNDELWSAKCLISSPHLVRRV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>Glyma20g28720.3 
          Length = 341

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MGLE  +T SFM DFL KCGG AVIDGGFATELERHGADLND LWSAKCLISSPHLVR+V
Sbjct: 1  MGLEGKETPSFMRDFLDKCGGCAVIDGGFATELERHGADLNDELWSAKCLISSPHLVRRV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>Glyma20g28720.5 
          Length = 298

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MGLE  +T SFM DFL KCGG AVIDGGFATELERHGADLND LWSAKCLISSPHLVR+V
Sbjct: 1  MGLEGKETPSFMRDFLDKCGGCAVIDGGFATELERHGADLNDELWSAKCLISSPHLVRRV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>Glyma03g31280.1 
          Length = 307

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 47/57 (82%)

Query: 9  SSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          SS ++D L++ GG AVIDGG ATELERHG DLNDPLWSAKCL SSPHL+R+V   +L
Sbjct: 2  SSLITDLLRETGGSAVIDGGLATELERHGDDLNDPLWSAKCLFSSPHLIRQVHLDYL 58


>Glyma19g34120.1 
          Length = 333

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 47/57 (82%)

Query: 9  SSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          SS ++D L++ GG AVIDGG ATELERHGADLNDPLWSAKCL S PHL+R+V   +L
Sbjct: 2  SSLITDLLRQTGGTAVIDGGLATELERHGADLNDPLWSAKCLFSFPHLIRQVHLDYL 58


>Glyma08g30150.1 
          Length = 323

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 10 SFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
            + D ++  GG AV DGGFAT+LE+HGA +NDPLWSA  LI  PHL+++V   +L
Sbjct: 4  QMLHDLIENAGGCAVTDGGFATQLEKHGASINDPLWSAIYLIKDPHLIKQVHLEYL 59