Jatropha Genome Database

JcCB0215961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0215961.30 - phase: 1 /partial
         (52 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g13600.1                                                        73   6e-14

>Glyma05g13600.1 
          Length = 99

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 38/44 (86%)

Query: 1  DESTYTTSYNYYMHGYNESVHGYFPDQAYATVDDNTVHLFSEDN 44
          DEST+ +SYNYY HGYNESV+GYFPDQAY TV D TV LFS+DN
Sbjct: 56 DESTFASSYNYYRHGYNESVYGYFPDQAYCTVQDETVFLFSDDN 99