Jatropha Genome Database

JcCB0213661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0213661.10 + phase: 0 /partial
         (125 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g22950.1                                                        72   9e-14
Glyma16g08920.1                                                        72   1e-13

>Glyma03g22950.1 
          Length = 165

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 42/48 (87%)

Query: 1  SDLHEWLLKHKGIFNVKTDIKTQNLTVEGTIESDKLLAYIRKKVHRNA 48
          +DL   L+KHKGIFNVKTD K QN+TVEGTIE +KL++++RK+VH+NA
Sbjct: 20 ADLKSRLIKHKGIFNVKTDQKAQNVTVEGTIEVEKLISFLRKRVHKNA 67


>Glyma16g08920.1 
          Length = 278

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 1   SDLHEWLLKHKGIFNVKTDIKTQNLTVEGTIESDKLLAYIRKKVHRNA 48
           +DL   L+KHKGIFNVKTD K QN+TVEGTIE +KL+++ RKKVH+NA
Sbjct: 121 ADLKSRLIKHKGIFNVKTDQKAQNVTVEGTIEVEKLISFFRKKVHKNA 168



 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 97  KEGNAPYFVHYVYAPQLFSDENPNACIIM 125
           K+ N PY +HYVYAPQLFSDENPN+C I+
Sbjct: 250 KDNNVPYIIHYVYAPQLFSDENPNSCSIL 278