Jatropha Genome Database

JcCB0212851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212851.10 - phase: 1 /pseudo
         (237 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g05090.1                                                       356   1e-98
Glyma13g19450.2                                                       356   1e-98
Glyma13g19450.1                                                       353   8e-98
Glyma0091s00210.1                                                      87   2e-17
Glyma09g16520.1                                                        53   3e-07
Glyma20g05100.1                                                        50   2e-06

>Glyma10g05090.1 
          Length = 430

 Score =  356 bits (913), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/218 (82%), Positives = 196/218 (89%)

Query: 1   GVTAAKGFKAAGIYGGLRAQGNKPDLALVTCDVDAAAAGAFTTNMVAAAPVLYCKNALDI 60
           GVTAA+GFKAAG+YGGLRA+G KPDLALVTCDVDA +AG+FTTN+VAAAPVLYCK  LDI
Sbjct: 29  GVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDI 88

Query: 61  SKTARAVLINAGQANAATGDAGYQDVLECADALAKVLNLKQEEVLIESTGVIGHRIKKEA 120
           S TARAVL NAGQANAATG  GYQDV+EC ++LAK+L +K EEVLIESTGVIG RIKK A
Sbjct: 89  SNTARAVLTNAGQANAATGKEGYQDVVECVESLAKLLKVKPEEVLIESTGVIGQRIKKGA 148

Query: 121 LLNALPELVNSLTSSLEGAGSAAVAITTTDLVSKSVAIESQVGDMSVRVGGMAKGSGMIH 180
           LLN+LP LVNSL+SS+EGA SAAVAITTTDLVSKSVAIES VG   VRVGGMAKGSGMIH
Sbjct: 149 LLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLVGGTRVRVGGMAKGSGMIH 208

Query: 181 PNMATMLGVITTDALVEADVWRKMVLIAVNRSFNQITV 218
           PNMATMLGVITTDA V +DVWRKMV +AVNRSFNQITV
Sbjct: 209 PNMATMLGVITTDAWVTSDVWRKMVQVAVNRSFNQITV 246


>Glyma13g19450.2 
          Length = 371

 Score =  356 bits (913), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 196/218 (89%)

Query: 1   GVTAAKGFKAAGIYGGLRAQGNKPDLALVTCDVDAAAAGAFTTNMVAAAPVLYCKNALDI 60
           GVTAA+GFKAAG+YGGLRA+G KPDLALVTCDVDA +AG+FTTN+VAAAPVLYCK  LDI
Sbjct: 61  GVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDI 120

Query: 61  SKTARAVLINAGQANAATGDAGYQDVLECADALAKVLNLKQEEVLIESTGVIGHRIKKEA 120
           S TARAVL NAGQANAATG  GYQD++EC ++LAK+L +K EEVLIESTGVIG RIKK A
Sbjct: 121 SNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGA 180

Query: 121 LLNALPELVNSLTSSLEGAGSAAVAITTTDLVSKSVAIESQVGDMSVRVGGMAKGSGMIH 180
           LLN+LP LVNSL+SS+EGA SAAVAITTTDLVSKSVAIES +G   VRVGGMAKGSGMIH
Sbjct: 181 LLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIH 240

Query: 181 PNMATMLGVITTDALVEADVWRKMVLIAVNRSFNQITV 218
           PNMATMLGVITTDA + +DVWRKMV +AVNRSFNQITV
Sbjct: 241 PNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITV 278


>Glyma13g19450.1 
          Length = 464

 Score =  353 bits (906), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 196/218 (89%)

Query: 1   GVTAAKGFKAAGIYGGLRAQGNKPDLALVTCDVDAAAAGAFTTNMVAAAPVLYCKNALDI 60
           GVTAA+GFKAAG+YGGLRA+G KPDLALVTCDVDA +AG+FTTN+VAAAPVLYCK  LDI
Sbjct: 61  GVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDI 120

Query: 61  SKTARAVLINAGQANAATGDAGYQDVLECADALAKVLNLKQEEVLIESTGVIGHRIKKEA 120
           S TARAVL NAGQANAATG  GYQD++EC ++LAK+L +K EEVLIESTGVIG RIKK A
Sbjct: 121 SNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGA 180

Query: 121 LLNALPELVNSLTSSLEGAGSAAVAITTTDLVSKSVAIESQVGDMSVRVGGMAKGSGMIH 180
           LLN+LP LVNSL+SS+EGA SAAVAITTTDLVSKSVAIES +G   VRVGGMAKGSGMIH
Sbjct: 181 LLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIH 240

Query: 181 PNMATMLGVITTDALVEADVWRKMVLIAVNRSFNQITV 218
           PNMATMLGVITTDA + +DVWRKMV +AVNRSFNQITV
Sbjct: 241 PNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITV 278


>Glyma0091s00210.1 
          Length = 149

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 48/58 (82%)

Query: 135 SLEGAGSAAVAITTTDLVSKSVAIESQVGDMSVRVGGMAKGSGMIHPNMATMLGVITT 192
           +L    SAAVAITTTDLVSKSVAIES VG   ++VGGMAKGSGMIHPNMATMLGV  T
Sbjct: 19  ALNNTYSAAVAITTTDLVSKSVAIESLVGGTKLKVGGMAKGSGMIHPNMATMLGVCLT 76


>Glyma09g16520.1 
          Length = 190

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 160 SQVGDMSVRVGGMAKGSGMIHPNMATMLGVITTDALVEADV--WRKMVL 206
           ++VG   ++VGGMAKGSGMIHPNMATMLG+     +++  V  W K +L
Sbjct: 104 TRVGGTKLKVGGMAKGSGMIHPNMATMLGMDHICLILKVRVLHWLKKIL 152


>Glyma20g05100.1 
          Length = 27

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/27 (88%), Positives = 24/27 (88%)

Query: 162 VGDMSVRVGGMAKGSGMIHPNMATMLG 188
           VG   VRVGGMAKGSGMIHPNMATMLG
Sbjct: 1   VGGTKVRVGGMAKGSGMIHPNMATMLG 27