Jatropha Genome Database

JcCB0212191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212191.10 + phase: 0 /partial
         (109 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42530.1                                                       102   1e-22
Glyma20g24590.1                                                        97   4e-21
Glyma03g35460.2                                                        88   2e-18
Glyma03g35460.1                                                        88   2e-18
Glyma19g38100.1                                                        67   3e-12

>Glyma10g42530.1 
          Length = 145

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 60/86 (69%), Gaps = 1/86 (1%)

Query: 1   MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
           MDTS PA+FVN  L+P  + K+VRTVVQV   D G    K+TDD QL +KG  P   L N
Sbjct: 40  MDTSNPAVFVNAQLIPNFIGKKVRTVVQVSQCDGGVATAKSTDDCQLTIKGL-PQVPLMN 98

Query: 61  FVEVIGIAESDKSIQAEIWTSFGDTF 86
           ++EVIGIAES+ SI AEIWT FG TF
Sbjct: 99  YIEVIGIAESNNSIDAEIWTDFGSTF 124


>Glyma20g24590.1 
          Length = 106

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
          MD S P++FVN  L+P  + K+VR VVQV   D G    K+TDD QL +KG  P   L N
Sbjct: 1  MDMSNPSVFVNAQLIPNFIGKKVRAVVQVSQCDGGVTTAKSTDDCQLTIKGL-PQVPLMN 59

Query: 61 FVEVIGIAESDKSIQAEIWTSFGDTF 86
          ++EVIGIAES+ SI AEIWT FG TF
Sbjct: 60 YIEVIGIAESNSSIDAEIWTDFGSTF 85


>Glyma03g35460.2 
          Length = 108

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 64/86 (74%), Gaps = 1/86 (1%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAA-LT 59
          MD S PA  VN  LL  ++ +RVR VVQV+ SD G VIGK+TD+ QLVVKG+PP AA LT
Sbjct: 1  MDISNPAALVNAELLHFYVGRRVRIVVQVVRSDGGVVIGKSTDEKQLVVKGSPPPAAPLT 60

Query: 60 NFVEVIGIAESDKSIQAEIWTSFGDT 85
           FVEV G+  SDKSI AEIWT+FGD 
Sbjct: 61 TFVEVYGLVNSDKSIGAEIWTNFGDA 86


>Glyma03g35460.1 
          Length = 108

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 64/86 (74%), Gaps = 1/86 (1%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAA-LT 59
          MD S PA  VN  LL  ++ +RVR VVQV+ SD G VIGK+TD+ QLVVKG+PP AA LT
Sbjct: 1  MDISNPAALVNAELLHFYVGRRVRIVVQVVRSDGGVVIGKSTDEKQLVVKGSPPPAAPLT 60

Query: 60 NFVEVIGIAESDKSIQAEIWTSFGDT 85
           FVEV G+  SDKSI AEIWT+FGD 
Sbjct: 61 TFVEVYGLVNSDKSIGAEIWTNFGDA 86


>Glyma19g38100.1 
          Length = 98

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 10/85 (11%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
          MD S PA  VN  LL  ++  RVR V+QV+ SD G VIGK+TD+ QLVVKG+PP A  T 
Sbjct: 2  MDISNPAALVNAELLHFYVGSRVRVVMQVVRSD-GVVIGKSTDEKQLVVKGSPPPAPHTT 60

Query: 61 FVEVIGIAESDKSIQAEIWTSFGDT 85
          +VEV G         AEIWT+FGD 
Sbjct: 61 YVEVYG---------AEIWTNFGDA 76