Jatropha Genome Database

JcCB0207431.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207431.30 - phase: 1 /pseudo/partial
         (102 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g40560.1                                                        59   1e-09
Glyma18g45270.1                                                        58   2e-09

>Glyma09g40560.1 
          Length = 435

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query: 61  EITWMAWAPKAIPTGNGQGLVLATASVDKKVKLWAAPSL 99
           +I+ ++WAPK IP GN Q LVLATAS DKKVKLWA+PS+
Sbjct: 394 DISCISWAPKTIPMGNEQVLVLATASADKKVKLWASPSI 432


>Glyma18g45270.1 
          Length = 429

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 61  EITWMAWAPKAIPTGNGQGLVLATASVDKKVKLWAAPSLHSA 102
           +I+ ++WAPK IP GN Q LVLATAS DKKVKLWA+PS+ S+
Sbjct: 388 DISCISWAPKPIPMGNEQVLVLATASADKKVKLWASPSIPSS 429