Jatropha Genome Database

JcCB0207251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.30 + phase: 0 /partial
         (64 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g27210.1                                                       127   3e-30
Glyma12g36520.1                                                       127   3e-30
Glyma20g16210.1                                                        55   2e-08

>Glyma13g27210.1 
          Length = 1171

 Score =  127 bits (319), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/64 (98%), Positives = 64/64 (100%)

Query: 1    VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 60
            VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA
Sbjct: 1108 VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 1167

Query: 61   KQNK 64
            KQ+K
Sbjct: 1168 KQSK 1171


>Glyma12g36520.1 
          Length = 1171

 Score =  127 bits (319), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/64 (98%), Positives = 64/64 (100%)

Query: 1    VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 60
            VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA
Sbjct: 1108 VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 1167

Query: 61   KQNK 64
            KQ+K
Sbjct: 1168 KQSK 1171


>Glyma20g16210.1 
          Length = 158

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)

Query: 1   VDAALDLSHTQNIGRMIKAHFPHSQ 25
           VDAALDLSHTQNIGRM KAHFPHS+
Sbjct: 129 VDAALDLSHTQNIGRMTKAHFPHSE 153