Jatropha Genome Database

JcCB0207251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.10 + phase: 0 /pseudo/partial
         (292 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36520.1                                                       277   8e-75
Glyma13g27210.1                                                       276   3e-74

>Glyma12g36520.1 
          Length = 1171

 Score =  277 bits (709), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 167/209 (79%), Gaps = 5/209 (2%)

Query: 84   LKERASLESQLGSLRMQINHLNLEVEEQKSKVASVRNTHDEAHSELELIRLKMKECDSQI 143
            ++E+ASLE+QL SL   I++L  E    + ++ S         S+L+ +RLKMKECD +I
Sbjct: 828  IQEQASLENQLASLGTLISNLASEFSFCRGRLCS-----QPFESQLKSVRLKMKECDQEI 882

Query: 144  NSFLKEQQKLQQKVSETKLERKKLENEVKRMEMQQKDCSTKVDKLIEKHAWIASEKQLFG 203
            ++ +KEQQKL+ K+SE+ LERK++ENEVKRMEM+QKDCS +VDKLIEKHAWIASEKQLFG
Sbjct: 883  SAIIKEQQKLEHKISESNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFG 942

Query: 204  RSGTDYDFMSRDPKKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIE 263
            RSGTDYDF SRDP KAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIE
Sbjct: 943  RSGTDYDFSSRDPTKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIE 1002

Query: 264  NDKSKIKKVIXXXXXXXXXXXXVTWVKVN 292
            NDKSKIK VI            VTW+KVN
Sbjct: 1003 NDKSKIKMVIEELDEKKKETLNVTWIKVN 1031


>Glyma13g27210.1 
          Length = 1171

 Score =  276 bits (705), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 169/209 (80%), Gaps = 5/209 (2%)

Query: 84   LKERASLESQLGSLRMQINHLNLEVEEQKSKVASVRNTHDEAHSELELIRLKMKECDSQI 143
            ++E+ASLE+QL SL   I++L  E+   ++++ S         S+L+ +RLKMKECD +I
Sbjct: 828  IQEQASLENQLASLGTLISNLASEISFCRARLCS-----QPFESQLKSVRLKMKECDKEI 882

Query: 144  NSFLKEQQKLQQKVSETKLERKKLENEVKRMEMQQKDCSTKVDKLIEKHAWIASEKQLFG 203
            ++ +K+QQKL+ K+SE+ LERK++ENEVKRME++QKDCS +VDKLIEKHAWIASEKQLFG
Sbjct: 883  SAIIKDQQKLEHKISESNLERKRMENEVKRMELEQKDCSVRVDKLIEKHAWIASEKQLFG 942

Query: 204  RSGTDYDFMSRDPKKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIE 263
            RSGTDYDF SRDP KAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKK IIE
Sbjct: 943  RSGTDYDFSSRDPTKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKYIIE 1002

Query: 264  NDKSKIKKVIXXXXXXXXXXXXVTWVKVN 292
            NDKSKIKKVI            VTW+KVN
Sbjct: 1003 NDKSKIKKVIEELDEKKKETLNVTWIKVN 1031