Jatropha Genome Database

JcCB0205061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0205061.10 + phase: 0 
         (95 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g29490.2                                                        76   7e-15
Glyma10g29490.1                                                        76   7e-15
Glyma20g28290.1                                                        70   7e-13
Glyma0428s00200.1                                                      70   8e-13
Glyma03g39730.1                                                        65   1e-11

>Glyma10g29490.2 
          Length = 615

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 10/77 (12%)

Query: 1  MLQNIVGAIT--GDSNGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELF 58
          M QNI+ A T  GD +        +G   ++ G+VVLMKKNVLDFNDF AS LDR+HE  
Sbjct: 1  MFQNIMNAFTTTGDDD--------NGPGHRVKGTVVLMKKNVLDFNDFSASFLDRLHEFV 52

Query: 59 GHGVSLQLISSVTSESG 75
          G  VSLQL+SSV  + G
Sbjct: 53 GKRVSLQLVSSVNVDPG 69


>Glyma10g29490.1 
          Length = 865

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 10/77 (12%)

Query: 1  MLQNIVGAIT--GDSNGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELF 58
          M QNI+ A T  GD +        +G   ++ G+VVLMKKNVLDFNDF AS LDR+HE  
Sbjct: 1  MFQNIMNAFTTTGDDD--------NGPGHRVKGTVVLMKKNVLDFNDFSASFLDRLHEFV 52

Query: 59 GHGVSLQLISSVTSESG 75
          G  VSLQL+SSV  + G
Sbjct: 53 GKRVSLQLVSSVNVDPG 69


>Glyma20g28290.1 
          Length = 858

 Score = 69.7 bits (169), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 40/53 (75%)

Query: 27 KKITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVSLQLISSVTSESGKFLF 79
          K++ G VVLMKK VLDF+D  A++LDRVHEL G GVSLQLIS+ T +  K L 
Sbjct: 12 KRVKGRVVLMKKGVLDFHDIKANVLDRVHELLGKGVSLQLISATTPDPAKGLL 64


>Glyma0428s00200.1 
          Length = 405

 Score = 69.7 bits (169), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 27 KKITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVSLQLISSVTSESG 75
          K++ G VVLMKK VLDF+D  A++LDRVHEL G GVSLQLIS+ T + G
Sbjct: 5  KRVKGRVVLMKKGVLDFHDIKANVLDRVHELLGKGVSLQLISATTPDPG 53


>Glyma03g39730.1 
          Length = 855

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)

Query: 1  MLQNIVGAITGDSNGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELFGH 60
          M QNIV A+             S     I G+V++ KKNVLDFND  ASLLDR+HE  G 
Sbjct: 1  MPQNIVNAL-------------STSMHIIRGTVIVTKKNVLDFNDLSASLLDRLHEFVGK 47

Query: 61 GVSLQLISSVTSESG 75
           VSLQLIS+V ++ G
Sbjct: 48 RVSLQLISAVQADPG 62