Jatropha Genome Database

JcCB0203341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203341.10 + phase: 0 /partial
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g33750.1                                                       214   1e-56
Glyma17g14040.1                                                       214   2e-56
Glyma03g03270.1                                                       183   5e-47
Glyma01g33640.1                                                       127   2e-30

>Glyma01g33750.1 
          Length = 371

 Score =  214 bits (546), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 107/122 (87%)

Query: 6   GFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLDPAFAP 65
           G  SIT EGR Q K+FGV+QYEM  FSRD   LENLKLGEG KGVYISIDVDCLDPAFAP
Sbjct: 250 GIRSITAEGRAQAKKFGVEQYEMRTFSRDRHFLENLKLGEGVKGVYISIDVDCLDPAFAP 309

Query: 66  GVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 125
           GVSHIEPGGLSFRDVLNILHNLQ DV+A DVVE NPQRDTVDGMTAMVAAKLVREL AKI
Sbjct: 310 GVSHIEPGGLSFRDVLNILHNLQGDVIAGDVVELNPQRDTVDGMTAMVAAKLVRELAAKI 369

Query: 126 SK 127
           SK
Sbjct: 370 SK 371


>Glyma17g14040.1 
          Length = 338

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/127 (84%), Positives = 109/127 (85%)

Query: 1   RPFQGGFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLD 60
           R  Q G  SIT EGR Q K+FGV+QYEM  FSRD   LENLKLGEG KGVYISIDVDCLD
Sbjct: 212 RLLQVGIRSITAEGRAQAKKFGVEQYEMRTFSRDRPFLENLKLGEGVKGVYISIDVDCLD 271

Query: 61  PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 120
           PAFAPGVSHIEPGGLSFRDVLNILHNLQ  VVA DVVEFNPQRDTVDGMTAMVAAKLVRE
Sbjct: 272 PAFAPGVSHIEPGGLSFRDVLNILHNLQGAVVAGDVVEFNPQRDTVDGMTAMVAAKLVRE 331

Query: 121 LTAKISK 127
           L AKISK
Sbjct: 332 LAAKISK 338


>Glyma03g03270.1 
          Length = 350

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)

Query: 1   RPFQGGFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLD 60
           R  Q G  SI KEGR Q K+FGV+Q+EM  FS+D   LENL LGEGAKGVYISIDVDCLD
Sbjct: 224 RLLQVGIRSINKEGREQAKKFGVEQFEMRHFSKDRPFLENLNLGEGAKGVYISIDVDCLD 283

Query: 61  PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 120
           P +A GVSH E GGLSFRDV+N+L NL+ D+V  DVVE+NPQRDT D MTAMVAAK VRE
Sbjct: 284 PGYAVGVSHYESGGLSFRDVMNMLQNLKGDIVGGDVVEYNPQRDTPDRMTAMVAAKFVRE 343

Query: 121 LTAKISK 127
           L AK+SK
Sbjct: 344 LAAKMSK 350


>Glyma01g33640.1 
          Length = 325

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 76/106 (71%), Gaps = 9/106 (8%)

Query: 9   SITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLDPAFAPGVS 68
           SI KEGR Q K+FG+ QYEM  FS+D   LENLKLGEG KGVYISIDVDCLD    PG S
Sbjct: 225 SINKEGREQAKKFGIKQYEMRHFSKDRPFLENLKLGEGVKGVYISIDVDCLD----PGRS 280

Query: 69  HIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVA 114
            I     SFRDV N+L N + D+V  D++E+NPQRDT D M AMVA
Sbjct: 281 LI-----SFRDVTNMLQNHKGDIVGGDMIEYNPQRDTPDRMIAMVA 321