Jatropha Genome Database

JcCB0202011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0202011.10 + phase: 0 /partial
         (212 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g37090.1                                                       183   1e-46
Glyma03g34400.1                                                        84   2e-16

>Glyma19g37090.1 
          Length = 1160

 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 136/219 (62%), Gaps = 26/219 (11%)

Query: 3    MNTKIRATAFAAFGALSSYGVGAQREIFLEQIHAA-------TPRLVLHLHDDDISVRHA 55
            MN K+RAT+FA FGALS YG+G   E F+EQ  A+       +P+L+             
Sbjct: 953  MNAKMRATSFAVFGALSKYGIGVLSEAFVEQPRASFNAQTSPSPQLI-----------SK 1001

Query: 56   CRNTLKHIAPLMKIEGLASLSNSHCCNSDHRS----DYEGFLRDFTRLLTQYLPSRVDSY 111
             R +L     ++KI  + SL N+   N    +    DYE FLRD  +  TQ+LPSRVDSY
Sbjct: 1002 YRISLLSTYSILKI--VFSLPNNQIWNVQLGNFRIYDYEDFLRDIAKQFTQHLPSRVDSY 1059

Query: 112  MASTIQAIDAPWPIIQANXXXXXXXXXXXXDDPRILALYYAQVFGMLVGKMNQSADAVVR 171
            MAST+QA DAPWPIIQAN            D+  ILA+Y++QVFGMLVGK+++S DAVVR
Sbjct: 1060 MASTVQAFDAPWPIIQANAIYFCSSMLSLSDNQHILAVYHSQVFGMLVGKLSRSPDAVVR 1119

Query: 172  ATCSSALGLLLRSTNSLSWRTARLDRDRVESSRRTHDSD 210
            AT S+ALGLLL+S++  SWR   L  DR+ES+ R HD +
Sbjct: 1120 ATSSAALGLLLKSSHLCSWRAVEL--DRLESTSRNHDVE 1156


>Glyma03g34400.1 
          Length = 103

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query: 117 QAIDAPWPIIQANXXXXXXXXXXXXDDPRILALYYAQVFGMLVGKMNQSADAVVRATCSS 176
           QA DAPWPIIQAN            D+  ILA+Y++QVF MLVGK++ S DAVVRAT S+
Sbjct: 27  QAFDAPWPIIQANAIYFWSSMLSLSDNQYILAVYHSQVFDMLVGKLSPSPDAVVRATSSA 86

Query: 177 ALGLLLRSTN 186
           ALGLLL+S++
Sbjct: 87  ALGLLLKSSH 96