Jatropha Genome Database

JcCB0201931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201931.20 + phase: 0 /partial
         (179 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43240.1                                                       123   1e-28
Glyma20g23600.1                                                        70   1e-12

>Glyma10g43240.1 
          Length = 372

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 94/151 (62%), Gaps = 9/151 (5%)

Query: 1   MLSGG-SRISLHLRECNLHHHQGFGLGFCSTRFIRLSSFMFRPSSVTIIGVADSNCYFPH 59
           M+ GG SRIS H R+C+ H H  F   + + +   LSS    P      G++ +     +
Sbjct: 1   MVGGGVSRISHHFRDCDFHFHFHFTFTYSAFQTFHLSSPPL-PLKPRWGGISQTTVPSNY 59

Query: 60  RLQQRMVXXXXXXXXXPGEIPIMPDCLSQQEDDNELPSQGLFPLAGGIVALGKFDALHIG 119
           R               PGEIP++ DC SQQE+D E+ S G   +AGGIVALGKFDALHIG
Sbjct: 60  RC-------FGTPPKSPGEIPLLFDCFSQQEEDREILSDGTSAVAGGIVALGKFDALHIG 112

Query: 120 HRELAIQASKVGSPYLLSFVGMAEVLGWEPR 150
           HRELAIQAS+ G P+LLSFVGMA+VLGWEPR
Sbjct: 113 HRELAIQASRAGPPFLLSFVGMAKVLGWEPR 143


>Glyma20g23600.1 
          Length = 299

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 16/82 (19%)

Query: 76  PGEIPIMPDCLSQQEDDNELPSQGLFPLAGGI--------------VALGKFDALHIGHR 121
           PGEIP++ DC SQQED+ E+ S G     G +                +GK DALHIGHR
Sbjct: 23  PGEIPLLFDCFSQQEDEREILSDGTSACGGDVGPTLILENFPSNPRYTMGKIDALHIGHR 82

Query: 122 ELAIQASKVGSPYLLSFVGMAE 143
           ELAIQAS  G P+LLS V + E
Sbjct: 83  ELAIQAS--GPPFLLSLVFVLE 102