Jatropha Genome Database

JcCB0200811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200811.20 - phase: 0 /pseudo/partial
         (216 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g03360.1                                                       374   e-104
Glyma04g03280.1                                                       371   e-103
Glyma02g46290.1                                                        55   4e-08
Glyma14g02430.1                                                        55   7e-08

>Glyma06g03360.1 
          Length = 358

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/200 (86%), Positives = 190/200 (95%)

Query: 16  LFLLQDILDLAKYASVPVINGLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGDGNNIV 75
           +F  +DILDLAKYA+VPVINGLTDYNHPCQIMADALTM+EHIG+ EGTKVVY+GDGNNIV
Sbjct: 158 VFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYIGDGNNIV 217

Query: 76  HSWLLLASVIPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDV 135
           HSWLL+ASVIPFHFVCACPKGFEPDAKTVEKA+ AGISKIEITNDPKEAV GADVVYSDV
Sbjct: 218 HSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDV 277

Query: 136 WASMGQKEEAAHRRKVFQGFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
           WASMGQKEEA +RR+VF+GFQV+++LM +AG KA+FMHCLPAERGVEVTD VIEAPNSIV
Sbjct: 278 WASMGQKEEAEYRRQVFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIV 337

Query: 196 FPQAENRMHAQNAIMLHALG 215
           FPQAENRMHAQNA+MLH LG
Sbjct: 338 FPQAENRMHAQNAVMLHVLG 357


>Glyma04g03280.1 
          Length = 358

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/200 (86%), Positives = 188/200 (94%)

Query: 16  LFLLQDILDLAKYASVPVINGLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGDGNNIV 75
           +F  +DILDLAKYA+VPVINGLTDYNHPCQIMADALTM+EHIG+ EGTKVVYVGDGNNIV
Sbjct: 158 VFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYVGDGNNIV 217

Query: 76  HSWLLLASVIPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDV 135
           HSWLL+ASVIPFHFVCACPKGFEPDAKTVEKA+ AGISKIEITNDPKEAV GADVVYSDV
Sbjct: 218 HSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDV 277

Query: 136 WASMGQKEEAAHRRKVFQGFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
           WASMGQKEEA +RR+ F+GFQV+++LM +AG KA+FMHCLPAERGVEVTD VIEAPNSIV
Sbjct: 278 WASMGQKEEAEYRRQAFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIV 337

Query: 196 FPQAENRMHAQNAIMLHALG 215
           FPQAENRMHAQNA+MLH L 
Sbjct: 338 FPQAENRMHAQNAVMLHVLA 357


>Glyma02g46290.1 
          Length = 391

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 19/195 (9%)

Query: 26  AKYASVPVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLL 81
           A  AS+PVIN G     HP Q + D  T+   IG+L+G +V  VGD   G  +     LL
Sbjct: 199 ATTASIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIRVGLVGDLANGRTVRSLAYLL 258

Query: 82  ASV--IPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASM 139
           A    +  +FV       + D K    ++  G+ + E + D  E     +VVY     + 
Sbjct: 259 AKYQDVKIYFVSPNVVKMKDDIKDYLTSK--GV-EWEESADLMEVASKCNVVYQ----TR 311

Query: 140 GQKEEAAHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
            QKE    + ++++     + V++D++ +    A  MH LP  R  E+T  V   P +  
Sbjct: 312 IQKERFGEKIELYEEARGKYIVNQDVLNVMQKHAVVMHPLP--RLDEITVDVDSDPRAAY 369

Query: 196 FPQAENRMHAQNAIM 210
           F QA+N ++ + A++
Sbjct: 370 FRQAKNGLYIRMALL 384


>Glyma14g02430.1 
          Length = 391

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 26  AKYASVPVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLL 81
           A  AS+PVIN G     HP Q + D  T+   IG+L+G +V  VGD   G  +     LL
Sbjct: 199 ATTASIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIRVGLVGDLANGRTVRSLAYLL 258

Query: 82  ASV--IPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASM 139
           A    +  +FV       + D K    ++  G+ + E + D  E     DVVY     + 
Sbjct: 259 AKYQDVKIYFVSPNVVKMKDDIKDYLTSK--GV-EWEESADLLEVASKCDVVYQ----TR 311

Query: 140 GQKEEAAHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
            QKE    + ++++     + V++D++      A  MH LP  R  E+T  V   P +  
Sbjct: 312 IQKERFREKIELYEEARGKYIVNQDVLDAMQKHAVVMHPLP--RLDEITVEVDRDPRAAY 369

Query: 196 FPQAENRMHAQNAIM 210
           F QA+N ++ + A++
Sbjct: 370 FRQAKNGLYIRMALL 384