Jatropha Genome Database

JcCB0198061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198061.10 - phase: 0 
         (226 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g35740.1                                                       163   1e-40
Glyma12g09740.1                                                        59   5e-09

>Glyma03g35740.1 
          Length = 650

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 114/196 (58%), Gaps = 19/196 (9%)

Query: 11  ELLPGKIRKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWKLMGTARTPSSAL 70
           +++PGKIRKRGC         ++ NYRFKR ILVGKRGGSSTPVPTWKLM ++R+P   L
Sbjct: 2   DMIPGKIRKRGCSSSASSSSSVLHNYRFKRTILVGKRGGSSTPVPTWKLM-SSRSP---L 57

Query: 71  RAMDSPKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSPKMKEMVXXXXXX 130
           RA+ SPKY  SQ G         + + APVSARKLAATLWEMNE+PSP            
Sbjct: 58  RALASPKYPPSQTGN--------KPRQAPVSARKLAATLWEMNEIPSP-------SPSVR 102

Query: 131 XXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXERMERSGTGSRHRRALSISQRLRLTDH 190
                         +                  ER++RSGTGSR +R  SISQ  R+T+H
Sbjct: 103 SKKELRTRERVPRSMRSGSLPPHLSDPSHSPVSERLDRSGTGSRQKRTPSISQGARITEH 162

Query: 191 NVGAFDSVSNASLMEV 206
           +VG  DS+SN SLME+
Sbjct: 163 HVGPLDSLSNVSLMEI 178


>Glyma12g09740.1 
          Length = 590

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 43/104 (41%)

Query: 18  RKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWKLMGTARTPSSALRAMDSPK 77
           RKRGC         +++ YRFKRAILVGK+GGSSTP                        
Sbjct: 18  RKRGCSSSSSSS--LVRRYRFKRAILVGKKGGSSTP------------------------ 51

Query: 78  YAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSPKMK 121
                             +   VSARKLAATLWE+N++P  ++K
Sbjct: 52  -----------------DKELSVSARKLAATLWEINDLPPSRVK 78