Jatropha Genome Database

JcCB0190821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190821.20 - phase: 2 /partial
         (66 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g09300.1                                                        71   3e-13
Glyma09g32480.1                                                        70   5e-13
Glyma14g08210.1                                                        67   6e-12
Glyma04g39490.1                                                        64   3e-11
Glyma06g15360.2                                                        64   4e-11
Glyma06g15360.1                                                        63   6e-11
Glyma20g16930.1                                                        52   1e-07

>Glyma07g09300.1 
          Length = 265

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPA 55
           YVPTNHLY+GDIFL+NT D++RPNLS+R          MS+PQI++T+D++  P 
Sbjct: 203 YVPTNHLYIGDIFLVNTKDVIRPNLSIREGIEIVVSGGMSMPQILSTIDSRIRPG 257


>Glyma09g32480.1 
          Length = 265

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQ 51
           YVPTNHLY+GDIFL+NT D++RPNLS+R          MS+PQI++T+D++
Sbjct: 203 YVPTNHLYIGDIFLVNTKDVIRPNLSIREGIEIVVSGGMSMPQILSTIDSR 253


>Glyma14g08210.1 
          Length = 259

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDA 50
           Y+PTNHLY+GDI+L++  DI+RPNLSVR          MS+PQI+TT+DA
Sbjct: 194 YIPTNHLYLGDIYLISPEDILRPNLSVREAIEIVISGGMSIPQILTTVDA 243


>Glyma04g39490.1 
          Length = 258

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATRLS 59
           +VPTNHLY+GDIFL+N+ DI+RPNLS+R          M++PQ+++ ++    P  R+S
Sbjct: 195 FVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQLISPVERDTRPNERVS 253


>Glyma06g15360.2 
          Length = 204

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATRLS 59
           +VPTNHLY+GDIFL+N+ DI+RPNLS+R          M++PQ+++ ++    P  R+S
Sbjct: 141 FVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQLISPVERATRPNERIS 199


>Glyma06g15360.1 
          Length = 258

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATRLS 59
           +VPTNHLY+GDIFL+N+ DI+RPNLS+R          M++PQ+++ ++    P  R+S
Sbjct: 195 FVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQLISPVERATRPNERIS 253


>Glyma20g16930.1 
          Length = 120

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 26/28 (92%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVR 28
           Y+PTNHLY+GDI+L++  DI+RPNLSVR
Sbjct: 88  YIPTNHLYLGDIYLISLEDILRPNLSVR 115