Jatropha Genome Database

JcCB0190531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190531.10 - phase: 0 /partial
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g42940.1                                                       185   2e-47
Glyma06g11810.1                                                       184   3e-47

>Glyma04g42940.1 
          Length = 276

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 97/109 (88%)

Query: 57  IQRVFRSGPLNPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGSHNSAFLQ 116
           IQR FRSGP+ PQPRILCLQG+ DGPEQYVA+MNAIFSAQ S VPIDSCY+GS+NSAFLQ
Sbjct: 134 IQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPIDSCYIGSNNSAFLQ 193

Query: 117 QASYITGGVYVKPQHLDGLFQYLVTVFATDLHCRSFLQLPRPAGVDFRA 165
           QASYITGG+Y KP  LDGL+QYL TVFATDLH R+FL+LP+  GVDFRA
Sbjct: 194 QASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRA 242


>Glyma06g11810.1 
          Length = 294

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 96/109 (88%)

Query: 57  IQRVFRSGPLNPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGSHNSAFLQ 116
           IQR FRSGP+ PQPRILCLQG  DGPEQYVA+MNAIFSAQ S VPIDSCY+GS+NSAFLQ
Sbjct: 134 IQRAFRSGPMPPQPRILCLQGVADGPEQYVAIMNAIFSAQHSTVPIDSCYIGSNNSAFLQ 193

Query: 117 QASYITGGVYVKPQHLDGLFQYLVTVFATDLHCRSFLQLPRPAGVDFRA 165
           QASYITGG+Y KP  LDGL+QYL TVFATDLH R+FL+LP+  GVDFRA
Sbjct: 194 QASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRA 242